Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 609 / 0 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 594 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT4G21760 587 / 0 BGLU47 beta-glucosidase 47 (.1) AT1G26560 441 / 1e-150 BGLU40 beta glucosidase 40 (.1) AT3G18080 430 / 3e-146 BGLU44 B-S glucosidase 44 (.1) AT5G36890 425 / 1e-144 BGLU42 beta glucosidase 42 (.1.2) AT2G44480 421 / 1e-142 BGLU17 beta glucosidase 17 (.1.2) AT3G18070 418 / 8e-142 BGLU43 beta glucosidase 43 (.1.2) AT5G54570 412 / 9e-139 BGLU41 beta glucosidase 41 (.1) AT2G44450 405 / 1e-136 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019300 [exp] 794 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019500 [exp] 793 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019700 [exp] 790 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 681 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G403900 [exp] 506 / 6e-176 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G015100 [exp] 459 / 9e-158 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 444 / 5e-152 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.012G049300 [exp] 440 / 3e-150 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 437 / 3e-149 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007656 [exp] 685 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 679 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 642 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 506 / 1e-167 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018354 [exp] 455 / 2e-156 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10031235 [exp] 455 / 8e-156 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 447 / 7e-153 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 444 / 2e-151 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10037098 [exp] 441 / 1e-150 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 441 / 1e-150 AT1G26560 773 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.004G019366.1 pacid=42794551 polypeptide=Potri.004G019366.1.p locus=Potri.004G019366 ID=Potri.004G019366.1.v4.1 annot-version=v4.1 ATGTATTTAAAGAAGGCTAGCAAAGGAAGAGGATTACATATCATGGGAACTCCTAGACTGTTTAAGCTTCCATTTCTCTTAGAGCTGATCTTCCTACCTC TCTTCGTATCATCTCATCCAAAAGCTTTGAAAGACAGCTTAGATCCTTCTTCATTGCCTCCCAACTTTCTCTTCGGCACAGCCTCCTCTTCTTATCAGTT TGAAGGAGCTTATCTCAGTGATGGTAAGGGTTTGAGCAACTGGGATATATTTACACACACATCAGGCAAAATAATTGATGGAAGCAACGGAGACATTGCT GTGGACCAATACCATCGCTTTCTGGAAGATATTGATTTGATGGAAACCCTTGGAGTCAACAGCTATAGGTTCTCAATTTCTTGGGCACGAATTCTACCTA AAGGGAGATTTGGAGATATTAATAGGGCTGGCATCAGCTACTATAACAAGCTCATCAATGCTCTCTTGCTTAAAGGAATTCAGCCATTTGTGACGTTAAC TCATTATGATATGCCTCAAGAATTGGAGGAGAGATATGGGGGGTGGCTAAGCCCTAAATGCCAGGAGGATTTCGGATATTATGTAGACATATGTTTCAAG TACTTTGGAGATCGAGTGAACTACTGGGTCACCTTCAATGAGCCAAATCTACAAGTCATAAATGGCTATCGCACCGGCGAAAGCCCACCGAGCCGCTGCT CCAGTCCTTTTGGGAATTGCACTCATGGGGATTCAGAGAAGGAAACCTTTCTTGCAGCACATAACATAATCTTAGCACATGCAAATGCAGTTCATATTTA TAGAACAAAATACCAGAAACAGCAAGGAGGCAGCATTGGGATCGTCATACATTGCCCTTGGTTTGAACCTTATAGTAATTCCACAGCGGACAATTTAGCC ACTGATAGAGCTCAAGACTTCTTAATGAACTGGTTCTTGGATCCAATCATCTTTGGAAAATATCCTGCAGAAATGACGAAAATTCTGGGGTCTGCTATAC CAAAATTTTCAAGCAATGACAGAGAGAAACTGAACAAGGGACTGGATTTCATTGGGATCAATCATTACACTGGTTTCTACATCCAAGATTGCAGCTTTGT TGTGTGTAAACCTGGACAAGGAGGCTCCAGGACTGAAGGTTTAGCCCAACAAGTCCAAGAAAAAGATGGAGTTCCTATTGGCAAATCTAGTGAAGTGGAC TGGATACATGTTTATCCACAAGGAATGGAGAAGATTATAACATATCTAAAGGAGAGATACAATAACACACCTATGATCATTACAGAGAATGGATTTGGCC AAGAGAGCTATCTAAACCGCACCATTGAAGAATATCTCCAAGATAGAGATAGGGTGGAATACATGTCTGGCTATTTGGATTCCTTGATGACAGCAATGCT GAAAGGAGCAGATGTGAGGGGCTATTTTGCCTGGTCCTTGCTTGATAATTTCGAGTGGGGACGTGGTTATACAAGAAGATTTGGACTTCACCATGTTGAT TACACCACACTGAAGAGAATTCCAAGACTATCAGCAACTTGGTTCAAGGAATTTATAGCAAGGTATAAGGTAGACAAATCCCAGATGTGA
AA sequence Show only first row Show all	>Potri.004G019366.1 pacid=42794551 polypeptide=Potri.004G019366.1.p locus=Potri.004G019366 ID=Potri.004G019366.1.v4.1 annot-version=v4.1 MYLKKASKGRGLHIMGTPRLFKLPFLLELIFLPLFVSSHPKALKDSLDPSSLPPNFLFGTASSSYQFEGAYLSDGKGLSNWDIFTHTSGKIIDGSNGDIA VDQYHRFLEDIDLMETLGVNSYRFSISWARILPKGRFGDINRAGISYYNKLINALLLKGIQPFVTLTHYDMPQELEERYGGWLSPKCQEDFGYYVDICFK YFGDRVNYWVTFNEPNLQVINGYRTGESPPSRCSSPFGNCTHGDSEKETFLAAHNIILAHANAVHIYRTKYQKQQGGSIGIVIHCPWFEPYSNSTADNLA TDRAQDFLMNWFLDPIIFGKYPAEMTKILGSAIPKFSSNDREKLNKGLDFIGINHYTGFYIQDCSFVVCKPGQGGSRTEGLAQQVQEKDGVPIGKSSEVD WIHVYPQGMEKIITYLKERYNNTPMIITENGFGQESYLNRTIEEYLQDRDRVEYMSGYLDSLMTAMLKGADVRGYFAWSLLDNFEWGRGYTRRFGLHHVD YTTLKRIPRLSATWFKEFIARYKVDKSQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	2.82	0.8683	SRPP.2
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	3.74	0.8225
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.004G022700 [exp]	3.87	0.8727
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	4.00	0.8408	Pt-APL3.2
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	5.47	0.8370
					Potri.010G084201 [exp]	7.14	0.8514
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	8.48	0.8191
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	10.67	0.7856
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G141300 [exp]	12.12	0.6773
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	12.40	0.8090

Compare expression of checked genes

Potri.004G019366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.