Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61820 657 / 0 BGLU46 beta glucosidase 46 (.1.3) AT4G21760 640 / 0 BGLU47 beta-glucosidase 47 (.1) AT1G61810 637 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G26560 459 / 6e-158 BGLU40 beta glucosidase 40 (.1) AT3G18080 459 / 8e-158 BGLU44 B-S glucosidase 44 (.1) AT2G44480 456 / 2e-156 BGLU17 beta glucosidase 17 (.1.2) AT3G18070 446 / 1e-152 BGLU43 beta glucosidase 43 (.1.2) AT2G44450 433 / 9e-148 BGLU15 beta glucosidase 15 (.1) AT5G54570 433 / 3e-147 BGLU41 beta glucosidase 41 (.1) AT5G44640 429 / 3e-146 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019700 [exp] 1042 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 823 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 809 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019800 [exp] 733 / 0 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G403900 [exp] 541 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G015100 [exp] 476 / 2e-164 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 470 / 4e-162 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.001G227200 [exp] 468 / 2e-161 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.008G094200 [exp] 467 / 6e-161 AT1G26560 798 / 0.0 beta glucosidase 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007656 [exp] 740 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 732 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10007655 [exp] 671 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 555 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018354 [exp] 486 / 9e-169 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10031251 [exp] 484 / 1e-167 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031235 [exp] 484 / 2e-167 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 473 / 5e-163 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10009644 [exp] 468 / 5e-161 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031808 [exp] 467 / 7e-161 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.004G019500.1 pacid=42796277 polypeptide=Potri.004G019500.1.p locus=Potri.004G019500 ID=Potri.004G019500.1.v4.1 annot-version=v4.1 ATGAATTGCATTATATCTAGCATGGGAATTTCTTCACTTTGTAAAGCTTTAATTCTCTTAGAGCTGATCCTGCTACCTCTCTTTGCATCATCTGATACAA AAACTCTGCATGAAAGTTCAGATTCTTCTTCATTTCCTGCCAACTTTCTCTTTGGGACTGCCTCCTCTTCTTATCAGTTTGAAGGAGCTTACCTGAGTGA TGGAAAAGGTTTGAGCAACTGGGATGTCCATACACATAAACCAGGAAACATAATTGATGGAAGCAATGGAGATATCGCCGTCGACCAATATCATCGGTAT CTGGAAGACATTGATCTAATGGCCTCCCTCGGAGTCAACAGCTATAGGTTTTCGATGTCATGGGCACGAATTCTACCCAAAGGGAGATTTGGAGGTGTCA ATATGGCTGGTATTAGCTACTATAACAAGCTGATCAATGCTCTCCTACTTAAAGGGATTCAACCATTTGTGTCATTGACTCATTTTGATGTGCCTCAAGA GCTTGAGGATAGATATGGGGGTTTTCTAAGTCCTAAATCCCAAGAGGATTTCGGATATTATGTAGACATCTGTTTCAAGTACTTCGGAGACCGAGTGAAG TACTGGGCCACCTTCAATGAGCCAAATTTTCAAGCCATTTATGGTTATCGTGTAGGTGAATACCCACCAAAACGCTGCTCAAAGCCTTTCGGAAATTGCA GTCATGGGGACTCAGAGAGGGAGCCCTTTATTGCGGCGCATAACATAATCTTAGCTCATGCAACTGCAGTTGATATTTACAGAACCAAATACCAGAGAGA GCAAAGAGGCAGCATTGGTATTGTCATGAATTGCATGTGGTATGAACCTATTAGCAATTCAACAGCAAACAAGTTAGCAGTTGAAAGAGCTCAAGCCTTC TTCTTGCGCTGGTTCTTGGACCCAATCATATTTGGAAGATATCCTGAAGAAATGAAAGAAGTTCTGGGATCTACTCTACCTGAATTTTCAAGAAATGACA TGAATAAATTGAGGAAGGGACTGGATTTTATCGGCATGAATCATTACACCAGTTACTACGTTCAAGATTGCATCTTGTCTGTGTGTGAACCTGGAAAAGG AAGCACGAGGACAGAAGGTTCCTCTCTATTAACTCAAGAAAAAGATGGAGTTCCCATCGGCAAACCTAGTGAAGTGGATTGGCTACATGTTTATCCACAA GGAATGGAAAAGATGGTTACCTATGTAAAGGAGAGATACAATAACACACCCATGATCATCACAGAAAATGGGTATTCCCAAGTGAGCAATTCAAACGGAA ACATTGAAGAATTCCTTCATGATACAGGAAGGGTGGAATACATGTCTGGCTATTTGGATGCCTTGCTGACAGCAATGAAGAAAGGAGCAGATGTGAGGGG CTATTTTGCCTGGTCCTTCCTTGATAATTTTGAGTGGACATTCGGTTATACAAGAAGATTTGGACTTTACCATGTTGATTACACCACAATGAAGCGAACT CCAAGATTATCAGCAACTTGGTACAAAGAATTTATTGCAAGGTATAAGGTAGACAAATCCCAGATGTGA
AA sequence Show only first row Show all	>Potri.004G019500.1 pacid=42796277 polypeptide=Potri.004G019500.1.p locus=Potri.004G019500 ID=Potri.004G019500.1.v4.1 annot-version=v4.1 MNCIISSMGISSLCKALILLELILLPLFASSDTKTLHESSDSSSFPANFLFGTASSSYQFEGAYLSDGKGLSNWDVHTHKPGNIIDGSNGDIAVDQYHRY LEDIDLMASLGVNSYRFSMSWARILPKGRFGGVNMAGISYYNKLINALLLKGIQPFVSLTHFDVPQELEDRYGGFLSPKSQEDFGYYVDICFKYFGDRVK YWATFNEPNFQAIYGYRVGEYPPKRCSKPFGNCSHGDSEREPFIAAHNIILAHATAVDIYRTKYQREQRGSIGIVMNCMWYEPISNSTANKLAVERAQAF FLRWFLDPIIFGRYPEEMKEVLGSTLPEFSRNDMNKLRKGLDFIGMNHYTSYYVQDCILSVCEPGKGSTRTEGSSLLTQEKDGVPIGKPSEVDWLHVYPQ GMEKMVTYVKERYNNTPMIITENGYSQVSNSNGNIEEFLHDTGRVEYMSGYLDALLTAMKKGADVRGYFAWSFLDNFEWTFGYTRRFGLYHVDYTTMKRT PRLSATWYKEFIARYKVDKSQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019500 [exp]	0	1
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019700 [exp]	1.00	0.9248
AT2G35380			Peroxidase superfamily protein...		Potri.001G145800 [exp]	2.00	0.8372
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.008G008700 [exp]	2.00	0.7855
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	7.21	0.7455
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050500 [exp]	7.34	0.8119
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147601 [exp]	8.77	0.7497
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.007G123000 [exp]	8.94	0.7390
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147701 [exp]	9.48	0.7421
AT4G33180			alpha/beta-Hydrolases superfam...		Potri.006G219400 [exp]	9.74	0.7830
AT5G02090			unknown protein		Potri.006G090100 [exp]	10.00	0.7505

Compare expression of checked genes

Potri.004G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.