Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36890 38 / 0.0001 BGLU42 beta glucosidase 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019800 [exp] 37 / 0.0002 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.004G019366 [exp] 37 / 0.0003 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.010G178800 [exp] 36 / 0.0005 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.004G019500 [exp] 36 / 0.0007 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018354 [exp] 37 / 0.0004 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10007655 [exp] 37 / 0.0004 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G019733.1 pacid=42794473 polypeptide=Potri.004G019733.1.p locus=Potri.004G019733 ID=Potri.004G019733.1.v4.1 annot-version=v4.1 ATGGTAAATGTAAGAATAACTGGGATGTTTATACCCGCAATTCAGGGAGGCAGAATAATTGATGGAAGCAATGGAGATGTTGCAGTGGACCACTATAATC ATGATCTTGTACCTACTGACATGATAAAGTATGTGGTTGGATTAATTAAGAAGGCAGCAACCATGCTCTCCTCTTCGTGCAGATCATAA
AA sequence Show only first row Show all	>Potri.004G019733.1 pacid=42794473 polypeptide=Potri.004G019733.1.p locus=Potri.004G019733 ID=Potri.004G019733.1.v4.1 annot-version=v4.1 MVNVRITGMFIPAIQGGRIIDGSNGDVAVDHYNHDLVPTDMIKYVVGLIKKAATMLSSSCRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G019733 [exp]	0	1
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	2.23	0.9704
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G073700 [exp]	4.00	0.9568
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	4.89	0.9629
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096300 [exp]	5.19	0.9589
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	6.00	0.9579
AT5G42070			unknown protein		Potri.003G141700 [exp]	7.48	0.9571
AT2G47485			unknown protein		Potri.002G200000 [exp]	11.18	0.9576
AT3G10910			RING/U-box superfamily protein...		Potri.013G157000 [exp]	11.48	0.9571
AT5G22340			unknown protein		Potri.009G160500 [exp]	11.95	0.9551
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.014G096800 [exp]	12.48	0.9526

Compare expression of checked genes

Potri.004G019733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.