Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21760 659 / 0 BGLU47 beta-glucosidase 47 (.1) AT1G61820 622 / 0 BGLU46 beta glucosidase 46 (.1.3) AT1G61810 620 / 0 BGLU45 beta-glucosidase 45 (.1.2.3) AT1G26560 463 / 1e-159 BGLU40 beta glucosidase 40 (.1) AT2G44450 447 / 3e-153 BGLU15 beta glucosidase 15 (.1) AT5G44640 447 / 3e-153 BGLU13 beta glucosidase 13 (.1) AT5G42260 442 / 2e-151 BGLU12 beta glucosidase 12 (.1) AT5G54570 443 / 3e-151 BGLU41 beta glucosidase 41 (.1) AT2G44480 442 / 4e-151 BGLU17 beta glucosidase 17 (.1.2) AT3G18080 440 / 2e-150 BGLU44 B-S glucosidase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G019500 [exp] 734 / 0 AT1G61820 657 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019700 [exp] 724 / 0 AT1G61820 655 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019300 [exp] 721 / 0 AT1G61820 636 / 0.0 beta glucosidase 46 (.1.3) Potri.004G019366 [exp] 714 / 0 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.001G403900 [exp] 541 / 0 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1) Potri.001G409900 [exp] 469 / 1e-161 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.001G015100 [exp] 464 / 8e-160 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.008G094200 [exp] 457 / 2e-157 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.004G040700 [exp] 454 / 3e-156 AT5G44640 548 / 0.0 beta glucosidase 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007655 [exp] 743 / 0 AT1G61820 620 / 0.0 beta glucosidase 46 (.1.3) Lus10007656 [exp] 704 / 0 AT1G61820 637 / 0.0 beta glucosidase 46 (.1.3) Lus10018353 [exp] 694 / 0 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10032660 [exp] 552 / 0 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018354 [exp] 546 / 0 AT4G21760 462 / 1e-159 beta-glucosidase 47 (.1) Lus10031251 [exp] 469 / 7e-162 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031235 [exp] 466 / 3e-160 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10037098 [exp] 459 / 4e-158 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 458 / 1e-157 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 454 / 3e-156 AT1G26560 778 / 0.0 beta glucosidase 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.004G019800.1 pacid=42793805 polypeptide=Potri.004G019800.1.p locus=Potri.004G019800 ID=Potri.004G019800.1.v4.1 annot-version=v4.1 ATGGAGTTTTTGTTAGGGTGTTATGCTTTCATTGTGCTTGACTTATGGTTCCTAGTGCTTATGGTGTCTTGCAATCCTATATTTCTCAAGGGGAGTTCAG ATAATTCAGCATTTCCAAGCAATTTTCTCTTTGGAACCGCCTCTTCTTCTTATCAGTTTGAAGGAGCTTACTTGAGTCATGGCAAAGGCCTCAGCAACTG GGATGTTTTTACTCATAAGCCTGGTACCATCATGGATGGAACTAATGGAGATATTGCTGTTGATCATTACCATCGATATCCGGAAGATCTGGATCTCATG GAGTATATTGGAGTCAATAGCTATCGTGTCTCCATATCATGGGCAAGAATCCTACCAAAGGGAAGATTTGGAACTGCGAATAGGGCTGGAATCAATCATT ATAACAAGTTCATCAACGAGCTTCTGCGTAGAGGTATCCAGCCATTTGTGACTTTGACTCACTATGACATTCCTCAGGAACTTGAAGACAGATATGGAGC TTGGCTAAGTCCTGAAATACAGGAGGATTTCAAATATTATGCAGATATATGTTTCAAATCCTTTGGAGACAGAGTGAAATACTGGACCACATTCAATGAG CCCAATGTTGCAGCAATTCGCGGTTACAGATCCGGAATTTTCCCACCATCTCGCTGCTCTGGGACATTTGGATACTGTAGCAGTGGAGATTCAGAGAGAG AGCCTTTTATTGCTGCACATAACATGATCCTATCCCATGCAGCTGCAGTCAATGTTTACAGAACTAAATACCAGAAAAAGCAAGGTGGAAGTATTGGAAT TGTTATGAATGCCATATGGCATGAACCCATCAGTGATTCTTTGGAAGACAAACTAGCAGTCGAGAGAGCTAACGCTTTCTATATGAACTGGTTCTTGGAC CCAATTATACTTGGGAAATATCCAACAGAAATGCGTGAAACTCTAGGATCTGATTTACCTGTATTTTCAAAGTATGAACTGGAGAAGCTGAAGAGCGGAG TGGACTTTATTGGCATCAATCAATATACTAGTTTCTATGTGAAGGACTGCATGTTTTCTACATGTGAACAAGGACCAGGAGTTTCCAAGACAGAAGGTCT CTATTTGAGGACTGCACAGAAGGATGGTTTCTTCATTGGTCAACCTACCGCACTTGACTGGCTACATGTTTATCCTCAAGGAATGGAAAAATTAGTGACC TATTTTAAAGACAGATACAACAACATACCGATGTACATTACAGAAAACGGGTATTGTGATGAGGAAAACGTCAATGTCACAACTAAAGCTGTATTGAAAG ATGTGCAGAGAGTGGAGTACATGAGCAGCTATTTAGATGCCCTGGAAACGGCTGTGAGGAAAGGAGCAGATGTTCGAGGGTACTTTGCATGGTCATTGCT TGACAATTTTGAGTGGACATCTGGATATACCATAAGGTTTGGGCTTTACCATGTCGATTTTTCCACTCTCAAGAGAACTCGAAAACTATCGGCAACTTGG TACAAAGATTACATTGCTAATTACAAGGCTGTCAGAACTAGCACCTGA
AA sequence Show only first row Show all	>Potri.004G019800.1 pacid=42793805 polypeptide=Potri.004G019800.1.p locus=Potri.004G019800 ID=Potri.004G019800.1.v4.1 annot-version=v4.1 MEFLLGCYAFIVLDLWFLVLMVSCNPIFLKGSSDNSAFPSNFLFGTASSSYQFEGAYLSHGKGLSNWDVFTHKPGTIMDGTNGDIAVDHYHRYPEDLDLM EYIGVNSYRVSISWARILPKGRFGTANRAGINHYNKFINELLRRGIQPFVTLTHYDIPQELEDRYGAWLSPEIQEDFKYYADICFKSFGDRVKYWTTFNE PNVAAIRGYRSGIFPPSRCSGTFGYCSSGDSEREPFIAAHNMILSHAAAVNVYRTKYQKKQGGSIGIVMNAIWHEPISDSLEDKLAVERANAFYMNWFLD PIILGKYPTEMRETLGSDLPVFSKYELEKLKSGVDFIGINQYTSFYVKDCMFSTCEQGPGVSKTEGLYLRTAQKDGFFIGQPTALDWLHVYPQGMEKLVT YFKDRYNNIPMYITENGYCDEENVNVTTKAVLKDVQRVEYMSSYLDALETAVRKGADVRGYFAWSLLDNFEWTSGYTIRFGLYHVDFSTLKRTRKLSATW YKDYIANYKAVRTST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	0	1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	1.73	0.9080
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023550 [exp]	2.44	0.8993
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	3.74	0.8352
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	5.47	0.8370
AT5G66815			unknown protein		Potri.014G034500 [exp]	5.74	0.8796
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	6.92	0.8338
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	6.92	0.8710
					Potri.019G005913 [exp]	8.66	0.8472
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.018G054800 [exp]	8.94	0.7616
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	10.19	0.7772

Compare expression of checked genes

Potri.004G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.