Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04230 86 / 1e-18 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G52680 72 / 7e-14 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G59190 71 / 7e-14 F-box/RNI-like superfamily protein (.1) AT4G26340 69 / 3e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G55030 63 / 3e-11 RNI-like superfamily protein (.1) AT4G14096 63 / 4e-11 F-box/RNI-like superfamily protein (.1) AT3G49030 61 / 2e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT4G14103 60 / 3e-10 F-box/RNI-like superfamily protein (.1.2) AT3G50710 60 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G38590 59 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024300 [exp] 132 / 2e-35 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 122 / 6e-32 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 103 / 1e-24 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121400 [exp] 71 / 1e-13 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 50 / 6e-07 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G104200 [exp] 50 / 1e-06 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 50 / 1e-06 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.002G132400 [exp] 49 / 3e-06 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 48 / 4e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G020200.1 pacid=42794974 polypeptide=Potri.004G020202.1.p locus=Potri.004G020200 ID=Potri.004G020200.1.v4.1 annot-version=v4.1 ATGGATGCAAGTGCTCAAGTAATCTGTGGCAAAAGCCAGAAGCTGGAAACAGAAGAGGGAAGGAATTTAATCAGAAATATACCAGATGTTATTCTCTTTC CTCCCAATGAAAGATGTTGTCATAGCATATTATCTAAAAGATGGAAAAACCTATGGATGTCGGTCCCCAATCTGGACTTTGAAGAAGAAGGCATATTTGG TGACAGGATACAAGAACTTCTCCCCTCATGTGATGTGCACTCTGATGCATCTCACATTAATACATGGATATTTGCTGCACTGTGTTGCAAATTTCAAGAA TTGAAACTTGACCTTTACCAATACAATGCAAACGAGTCATTATTACCTCATTGTCTATTTACTTTTCAGTCATTAACTGTATTGGAACTATACCTATTTC ATGATCTTAAACTTCTTTCAACCATATGCCTTCCCAATCTCAAGGAGTTGAAATTGCCATTTATTACATTTGTGGATGACCACTCAACACAGCTCTTTGA TGGTTGCCTGAATTTGCGTAAGGTGACTCTTGATGAATGCACATGGAAGGATGAGAAGTTTGTTTTTATTTCTTCTCCTATGCTCAAATTCTTATCTATA TGTGATCTTACATGGGATGACGGCAGTCCAAATGATTGTCAAGTTGTGACTTGTGGAACAAATCTCAAATTCTTTTCCTACAGCGGTGAACTCAAAACAG ATTTTTGCTTATATTCATCCTCACTGGTTAATGGATGTATGGATTTGAGATCAGTGACAGTGTCTGAGTGGATGGAAAACAAAGGGAAGCTGCTTATCAC GTGCGTAAGCTTCTTAAGGGGTTCTCTAGTGTTGAAAGCTTGA
AA sequence Show only first row Show all	>Potri.004G020200.1 pacid=42794974 polypeptide=Potri.004G020202.1.p locus=Potri.004G020200 ID=Potri.004G020200.1.v4.1 annot-version=v4.1 MDASAQVICGKSQKLETEEGRNLIRNIPDVILFPPNERCCHSILSKRWKNLWMSVPNLDFEEEGIFGDRIQELLPSCDVHSDASHINTWIFAALCCKFQE LKLDLYQYNANESLLPHCLFTFQSLTVLELYLFHDLKLLSTICLPNLKELKLPFITFVDDHSTQLFDGCLNLRKVTLDECTWKDEKFVFISSPMLKFLSI CDLTWDDGSPNDCQVVTCGTNLKFFSYSGELKTDFCLYSSSLVNGCMDLRSVTVSEWMENKGKLLITCVSFLRGSLVLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	0	1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.008G174000 [exp]	1.41	0.8524
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.015G106600 [exp]	4.24	0.8070
AT3G51500			unknown protein		Potri.011G146400 [exp]	4.58	0.8105
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	7.74	0.8058	LSD1.2
AT5G27280			Zim17-type zinc finger protein...		Potri.002G015900 [exp]	9.16	0.8359
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.006G124100 [exp]	9.16	0.7834
AT5G57060			unknown protein		Potri.003G044400 [exp]	9.16	0.8129
AT5G51040			unknown protein		Potri.015G108300 [exp]	9.48	0.8188
AT4G18593			dual specificity protein phosp...		Potri.004G056600 [exp]	10.00	0.8271
AT4G35980			unknown protein		Potri.005G111900 [exp]	10.19	0.7631

Compare expression of checked genes

Potri.004G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.