Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54770 506 / 0 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025200 [exp] 627 / 0 AT5G54770 541 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Potri.011G134900 [exp] 537 / 0 AT5G54770 543 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007646 [exp] 503 / 5e-180 AT5G54770 550 / 0.0 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1) Lus10018364 [exp] 371 / 4e-130 AT5G54770 379 / 2e-133 THIAZOLE REQUIRING, THIAMINE4, thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01946 [poplar] [flax] Thi4 Thi4 family
Representative CDS sequence Show only first row Show all	>Potri.004G020500.3 pacid=42795858 polypeptide=Potri.004G020500.3.p locus=Potri.004G020500 ID=Potri.004G020500.3.v4.1 annot-version=v4.1 ATGGCCTCTACCCTTACCTCCTCTCTATCTATAAACCTCAAATCCTCTTTCTTGGATCACAAATCATCCTTCCATGGCACACCTATCACAACTACTGGGC GTTTCACTCCAATCAAATCCACCTCTCCTGCCATTACCATGTCCTTGACACAACCTTCATATGATCTTCAGTCCTTTAAGTTCCAGCCCATCAAAGAATC CATCGTCTCTCGGGAAATGACTCGTCGTTACATGACAGACATGGTTACTTACGCAGACACTGATGTTGTCGTTGTTGGTGCTGGCTCTGCTGGTCTTTCT TGTGCTTATGAGCTAAGCAAGAACCCTTCAGTTCGTGTTGCTATAATTGAGCAATCGGTTAGCCCTGGAGGTGGTGCATGGCTTGGTGGCCAGCTATTTT CAGCTATGATTGTGCGTAAACCAGCTCATAGATTTCTTGATGAGCTTGAAATTGAATATGACGAGGCAGATAACTATGTGGTTATCAAGCATGCAGCTTT GTTCACTTCAACAATCATGAGCAAACTCTTGGCTAGGCCTAATGTGAAGCTGTTTAATGCTGTGGCAGCAGAGGATTTAATAGTGAAAGGAGGCAGAGTT TCTGGTGTGGTTACTAACTGGGCTTTAGTGTCTATGAACCATAACACTCAATCTTGCATGGACCCTAATGTCATGGAGGCTAAGATTGTGGTTAGTTCTT GTGGACACGATGGGCCTTTTGGTGCTACTGGAGTGAAGAGATTGAAGAGTATTGGCATGATTGATAGTGTTCCAGGAATGAAAGCACTTGACATGAACGC GGCCGAAGATGCAATTGTTAGGCTTACAAGAGAGATTGTGCCTGGCATGATTGTTACAGGCATGGAAGTTGCAGAAATTGATGGAGCACCAAGAATGGGT CCAACATTTGGGGCAATGATGATCTCAGGGCAGAAGGCTGCACACTTGGCTTTGAAGGCTTTGGGGCAACCAAATGCCCTAGATGGAACATTCAGTCTAC AGCCAGAGCTTGTGCTTGCTGCTGCTGAGGCTGGAGAGATAGTTGATGCATGA
AA sequence Show only first row Show all	>Potri.004G020500.3 pacid=42795858 polypeptide=Potri.004G020500.3.p locus=Potri.004G020500 ID=Potri.004G020500.3.v4.1 annot-version=v4.1 MASTLTSSLSINLKSSFLDHKSSFHGTPITTTGRFTPIKSTSPAITMSLTQPSYDLQSFKFQPIKESIVSREMTRRYMTDMVTYADTDVVVVGAGSAGLS CAYELSKNPSVRVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHRFLDELEIEYDEADNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV SGVVTNWALVSMNHNTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMG PTFGAMMISGQKAAHLALKALGQPNALDGTFSLQPELVLAAAEAGEIVDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.004G020500 [exp]	0	1
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.016G071850 [exp]	1.00	0.9906
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	2.44	0.9697	RBP29.2
					Potri.001G093100 [exp]	4.00	0.9484
					Potri.017G111225 [exp]	4.47	0.9543
AT1G59970			Matrixin family protein (.1)		Potri.013G100400 [exp]	4.58	0.9485
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	5.74	0.9607
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.008G029300 [exp]	8.66	0.9416
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	8.83	0.9519
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	14.83	0.9528
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	15.42	0.9411

Compare expression of checked genes

Potri.004G020500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.