Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21170 365 / 4e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 166 / 3e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 152 / 3e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 141 / 2e-35 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 137 / 7e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 135 / 2e-33 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G19290 135 / 3e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 132 / 2e-32 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11710 131 / 4e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 130 / 5e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147700 [exp] 166 / 4e-44 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 157 / 1e-40 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 150 / 3e-38 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G071600 [exp] 148 / 5e-38 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 149 / 9e-38 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G003700 [exp] 144 / 2e-36 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 142 / 1e-35 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 136 / 1e-33 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050180 [exp] 134 / 2e-33 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012037 [exp] 170 / 2e-45 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 157 / 1e-40 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 156 / 3e-40 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 155 / 7e-40 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 154 / 3e-39 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016727 [exp] 140 / 1e-35 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036506 [exp] 142 / 2e-35 AT2G16880 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041421 [exp] 140 / 1e-34 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 138 / 4e-34 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 136 / 1e-33 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G020900.1 pacid=42796305 polypeptide=Potri.004G020901.1.p locus=Potri.004G020900 ID=Potri.004G020900.1.v4.1 annot-version=v4.1 ATGTCTCTTAACAGAGCAAACCCAACAACTTCCATGAAATGGAGAATCCAAATCAGACAAAACCAGTTAGTGTTCCAAATATCGTCAATCCTCTTACAAA GACACAACTGGGTTTCACTTCTCCAAAACTTCAACCTCTCCACAAAACTAACTCCTCCTCTCTTTAACCAAATCCTCCACAAAACACAAACTAACCCTCA AATTTCTCTGCGCTTCTTCAACTGGGTCCAAACCAACCTAAAGCTTAAACCAGACCTTAAATCCCAATGTCACATCATCAATATTTGTGTCAATTCGGGT CTCACTCTACCTGTGAGACCAATCATGGATTCTTTGGTGAAAACACATCACGTGTCAGTTCTTGGAGAGGCCATGGTTGATTCTTGTAGAGGTAAAAGTT TAAAGTCTGATGCCTTCAGTTTTGTTCTTGAATGTTACTCGCATAAGGGTCTGTTTATGGAAAGTTTAGAGATGTTTAGGAAGATGAGGGGTAATGGATT TATTGCTTCTGGTACTGCCTGTAATTCTGTTCTTGATGTTTTGCAAAGAGAAAATGAGATTAAATTAGCTTGGTGTTTTTATTGTGCCATGATTAAAGAT GGGGTTTTGCCTGATAAATTAACTTGGTCGTTGATTGCTCAGATTCTTTGTAAAGATGGGAACTTTGAGAGAATTGTTAAATTTTTAGATATGGGTGTTT ATAATTCAGTTTTGTATAACGGTGTTATTGATTGTTGTAGTAAAAGAGGGGATTTTGAAGCTGCTTTTGAGAGGCTAAATCAGATGTGTGAGAGGAAACT TGACCCTGGTTTTAGTACTTATAGTGCGATACTTGATGGAGCTTGTAAACATGGGAATGAAGAAGTGATTGAGAGAGTTATGGATATAATGGCTGAGAAA GGCTTGCTTCCAAAATGCCCTTTGTCTCAATGTGATTCAGTCATTCAAAAGTTTTCTGATTTGTGTAAGATGAATGTAGCAACAATGTTTTTTAGGAGAG CTTGTGATGAGAAGATTGGATTACAAGATGCTACTTATGGGTGTATGTTAAAGGCATTGTCTAAAGAAGCAAGAGTAAAGGAAGCAATTGGTTTATACAG TTTAATTTCCGAAAAGGGAATCAGAGTGAAGGATAGTACTTATCATGCATTTTTGGATCTTCTCAGTGAAGAAGATCAGTATGAAGAAGGATATGAGATA TTGGGGGACATGATGAGAAGAGGTTTTAGACCTGGTACAGTTGGGTTGTCTAAATTTATCTTGTTACTAAGTAGAAAACGTAGATGGAGGGAAGTGGAAG ACTTGCTGGATTTAGTTTTAGAGAAAGGATTACTGCCAGATTCGTTGTGCTGCTGCTCCCTAGTTGAGCATTATTGCTCTAGGAGACAGATTGATAAAGC TGTTGCGTTGCATAACAAGATGGAGAAATTGCAAGCAAGTTTGGATGTTGCAACATATAATATACTTCTTGATGGGCTTGTAAAAAACGGTAGGATTGAA GAAGTAGTTAGGGTATTTGATTACATGAAAGGACTCAAATTAGTGAATAGTGAAAGTTTTACAATAACAATCCGTGGGCTTTGCCGTGCAAAAGAAATGA GGAAAGCAATGAAACTTCATGATGAAATGCTGGACATGGGGCTGAAACCTGATAAAGCAGCATATAAAAGGCTGATATTGGAATTCAACAAGTAG
AA sequence Show only first row Show all	>Potri.004G020900.1 pacid=42796305 polypeptide=Potri.004G020901.1.p locus=Potri.004G020900 ID=Potri.004G020900.1.v4.1 annot-version=v4.1 MSLNRANPTTSMKWRIQIRQNQLVFQISSILLQRHNWVSLLQNFNLSTKLTPPLFNQILHKTQTNPQISLRFFNWVQTNLKLKPDLKSQCHIINICVNSG LTLPVRPIMDSLVKTHHVSVLGEAMVDSCRGKSLKSDAFSFVLECYSHKGLFMESLEMFRKMRGNGFIASGTACNSVLDVLQRENEIKLAWCFYCAMIKD GVLPDKLTWSLIAQILCKDGNFERIVKFLDMGVYNSVLYNGVIDCCSKRGDFEAAFERLNQMCERKLDPGFSTYSAILDGACKHGNEEVIERVMDIMAEK GLLPKCPLSQCDSVIQKFSDLCKMNVATMFFRRACDEKIGLQDATYGCMLKALSKEARVKEAIGLYSLISEKGIRVKDSTYHAFLDLLSEEDQYEEGYEI LGDMMRRGFRPGTVGLSKFILLLSRKRRWREVEDLLDLVLEKGLLPDSLCCCSLVEHYCSRRQIDKAVALHNKMEKLQASLDVATYNILLDGLVKNGRIE EVVRVFDYMKGLKLVNSESFTITIRGLCRAKEMRKAMKLHDEMLDMGLKPDKAAYKRLILEFNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21170			Tetratricopeptide repeat (TPR)...		Potri.004G020900 [exp]	0	1
AT2G24960			unknown protein		Potri.006G265900 [exp]	17.91	0.7791
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G033600 [exp]	19.36	0.6862
					Potri.002G055950 [exp]	40.98	0.6936
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	50.01	0.7212
AT5G22450			unknown protein		Potri.008G020600 [exp]	61.61	0.7286
AT2G33490			hydroxyproline-rich glycoprote...		Potri.017G063000 [exp]	68.35	0.7222
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	78.12	0.6967
AT3G52420		ATOEP7	outer envelope membrane protei...		Potri.002G054700 [exp]	80.94	0.6591
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.002G018400 [exp]	85.19	0.6931
AT4G18530			Protein of unknown function (D...		Potri.004G227700 [exp]	90.74	0.7042

Compare expression of checked genes

Potri.004G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.