Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025966 [exp] 310 / 4e-110 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 310 / 4e-110 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G026032 [exp] 308 / 1e-109 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.011G026200 [exp] 308 / 2e-109 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.014G152800 [exp] 308 / 2e-109 AT1G24020 54 / 1e-09 MLP-like protein 423 (.1.2) Potri.011G026100 [exp] 307 / 3e-109 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Potri.016G046500 [exp] 296 / 1e-104 AT1G24020 50 / 4e-08 MLP-like protein 423 (.1.2) Potri.008G213100 [exp] 271 / 2e-94 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.008G212500 [exp] 253 / 2e-87 AT1G24020 52 / 6e-09 MLP-like protein 423 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016840 [exp] 127 / 6e-38 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 121 / 2e-35 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10003187 [exp] 118 / 3e-34 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10015339 [exp] 99 / 8e-27 ND 41 / 6e-05 Lus10039454 [exp] 96 / 1e-25 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10014508 [exp] 96 / 1e-25 ND / Lus10032178 [exp] 94 / 6e-25 ND / Lus10005608 [exp] 87 / 6e-22 ND / Lus10016839 [exp] 82 / 3e-20 ND / Lus10037393 [exp] 45 / 3e-06 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF00407 [poplar] [flax] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Potri.004G021100.1 pacid=42796603 polypeptide=Potri.004G021100.1.p locus=Potri.004G021100 ID=Potri.004G021100.1.v4.1 annot-version=v4.1 ATGGGTGTCATCACTTCAGAAAATGAGTTTGCCATTGCTGTCGCCCCAGCCAAGCTTTTCAAGGCATACTGTCTTGATACAGATACTCTCCTGCCTAAAA TTCTGCCAGAACATATTAAGAGCTCTGAGATAATTGAAGGAAATGGAGGGCCAGGAACCATCAGGAAGATCACTTTTGCTGAAGGCAAAGAACTCAGTTA TGCCAAGCAGATGATTGAAGCCATTGACGAAGAGAACTTAACATACAGCTTCAGCCTGATTGAAGCCAATGTCTGGAAGGATGCAGTTGAAAAGGTGACT TATGAACACAAGTTTGTGCCAACTCCCGAGGGAGGATGCATCTGCAAGAGAACCAGCACATATTACATCAAGGGTGATGCTGAGATCAACAAAGATCAAA TCAAGGATGTGTATGGCAAAAAGACTGCAGGCTTGTTCAAGGCTGTCGAGGCATATTTCTTGGCAAATCCAGATGCCTAG
AA sequence Show only first row Show all	>Potri.004G021100.1 pacid=42796603 polypeptide=Potri.004G021100.1.p locus=Potri.004G021100 ID=Potri.004G021100.1.v4.1 annot-version=v4.1 MGVITSENEFAIAVAPAKLFKAYCLDTDTLLPKILPEHIKSSEIIEGNGGPGTIRKITFAEGKELSYAKQMIEAIDEENLTYSFSLIEANVWKDAVEKVT YEHKFVPTPEGGCICKRTSTYYIKGDAEINKDQIKDVYGKKTAGLFKAVEAYFLANPDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G021100 [exp]	0	1
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.001G336700 [exp]	1.73	0.9658
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	7.21	0.9628
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	9.64	0.9596
					Potri.019G016100 [exp]	10.77	0.9586
AT3G01190			Peroxidase superfamily protein...		Potri.011G027300 [exp]	15.81	0.9573
					Potri.003G204450 [exp]	17.66	0.9508
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	17.86	0.9514
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191500 [exp]	17.94	0.9399
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	18.52	0.9545	CYP87.2
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	19.28	0.9549	Pt-PRX1.7

Compare expression of checked genes

Potri.004G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.