Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022200 [exp] 178 / 3e-58 AT3G09790 42 / 8e-05 ubiquitin 8 (.1) Potri.004G021400 [exp] 46 / 9e-07 ND /
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] Ubiquitin PF14560 [poplar] [flax] Ubiquitin_2 Ubiquitin-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G022300.1 pacid=42796528 polypeptide=Potri.004G022300.1.p locus=Potri.004G022300 ID=Potri.004G022300.1.v4.1 annot-version=v4.1 ATGTGTTTCTTGCAGACATTGAAGGTCAAGGTTGTTATTGATGGTACAAGGTTCCCCATAGAACTTCCAAATGATGCAACTGTCCAGGACCTAAAAGAGG CAGTCCATCGTATGTTTAATTTCTATGCTGTGGAGAACCAAGAGTTGCTTTTTAACGGGCTGTTGTTGCTAAATTACATAAAATTAGAAACTTATGAAGT CGTTGATGATTCTGAAATTATCCTCCAAATATTTTTCACTGTTGGAATCATCGGAAAAAACCCAGACGGGCAATACCACAGGTACGAAGTGAGAGCCCAC CGGAGTAATACTGTTCAGGACTTGAAGCTGAAGCTCCATATGTACCATGGTTTGGACATTACCAATATGAATCTCCAAATGAGGCCTGAATATTACCTGC AAGATCGTACTTTTTTGTGGGCTAATGAAATTTCTAGCAGCACTGATATTTATATAGTTTAG
AA sequence Show only first row Show all	>Potri.004G022300.1 pacid=42796528 polypeptide=Potri.004G022300.1.p locus=Potri.004G022300 ID=Potri.004G022300.1.v4.1 annot-version=v4.1 MCFLQTLKVKVVIDGTRFPIELPNDATVQDLKEAVHRMFNFYAVENQELLFNGLLLLNYIKLETYEVVDDSEIILQIFFTVGIIGKNPDGQYHRYEVRAH RSNTVQDLKLKLHMYHGLDITNMNLQMRPEYYLQDRTFLWANEISSSTDIYIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G022300 [exp]	0	1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	2.00	0.9528
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.010G111400 [exp]	4.24	0.9516
					Potri.001G459001 [exp]	5.47	0.9521
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	7.74	0.9507	Pt-CYP709.2
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.017G048100 [exp]	7.74	0.8972
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.002G029400 [exp]	8.66	0.9370
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Potri.002G088200 [exp]	9.48	0.9361
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	11.61	0.9357	Pt-INO.2
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.011G114500 [exp]	11.66	0.9147
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Potri.001G007100 [exp]	13.78	0.8500

Compare expression of checked genes

Potri.004G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.