Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05230 144 / 1e-42 Ubiquitin-like superfamily protein (.1) AT4G03360 112 / 1e-29 Ubiquitin family protein (.1) AT4G02950 109 / 3e-28 CRRJ Ubiquitin family protein (.1) AT2G32350 99 / 7e-25 Ubiquitin-like superfamily protein (.1) AT4G05260 91 / 1e-21 Ubiquitin-like superfamily protein (.1) AT4G05250 85 / 7e-19 Ubiquitin-like superfamily protein (.1) AT4G03370 82 / 5e-18 Ubiquitin family protein (.1) AT4G02970 69 / 2e-13 AT7SL-1 7SL RNA1 (.1) AT4G05240 66 / 5e-13 Ubiquitin-like superfamily protein (.1) AT4G03350 65 / 5e-12 EVE1 ETERNALLY VEGETATIVE PHASE 1, ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037600 [exp] 114 / 1e-30 AT2G32350 294 / 4e-101 Ubiquitin-like superfamily protein (.1) Potri.011G026600 [exp] 61 / 4e-11 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.006G129600 [exp] 61 / 1e-10 AT5G20620 600 / 0.0 ubiquitin 4 (.1) Potri.017G135600 [exp] 61 / 1e-10 AT4G02890 597 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.007G123300 [exp] 61 / 1e-10 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G263000 [exp] 61 / 1e-10 AT4G05320 752 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G418500 [exp] 61 / 1e-10 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.017G036800 [exp] 61 / 1e-10 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.004G021500 [exp] 61 / 1e-10 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007641 [exp] 251 / 3e-83 AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) Lus10018369 [exp] 140 / 8e-42 AT4G05230 143 / 5e-44 Ubiquitin-like superfamily protein (.1) Lus10039679 [exp] 89 / 1e-20 AT2G32350 239 / 1e-79 Ubiquitin-like superfamily protein (.1) Lus10018370 [exp] 84 / 3e-20 AT4G02970 60 / 3e-12 7SL RNA1 (.1) Lus10018367 [exp] 61 / 5e-11 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10034308 [exp] 42 / 0.0004 AT3G02540 491 / 7e-174 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3) Lus10008873 [exp] 40 / 0.0005 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10034307 [exp] 41 / 0.0008 AT3G02540 493 / 1e-173 RADIATION SENSITIVE23C, PUTATIVE DNA REPAIR PROTEIN RAD23-3, Rad23 UV excision repair protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Potri.004G022400.1 pacid=42795910 polypeptide=Potri.004G022400.1.p locus=Potri.004G022400 ID=Potri.004G022400.1.v4.1 annot-version=v4.1 ATGGATGTCATTTTTGAGCCCCAAAGAGGCGGGCCATTCTCCATTGAAGTGGGTTTCTTTGATACAGTCTCGGAGATCAAAGAGAAGGTACACAAGTACC ATGGTATACCTATAAACAAGCAAACCCTAGTTTTTCATGGCCAAGTTCTTCAAGATGATAAAGATGTAGAATATTGTGAAATCCTCCAAAACTCTCGCAT TCAACTCCTTATAACACCTGAAACCGATCAAATACCTCAAGACAAGGTTGAACAAACCTCACACTCCAAGAAAGTTCAGCTGCGTATCAAGATTCCATCA AACCAAACGCTTGTCCCTCTTGAAATGGATATGAGCGATACTGTGCTACATCTAAAAGAAAAGATTCGTGAGATAGAGCCAGTTCCAGTTAAAAGATTAG TGCTACAATCGAATGGTGCGGAGTTGCAAGATCATCAGTCTTTACATGAATGTGAGTTGAAGTATAATAGTGAGATTAGCGTCAACGTAAAGCCATCACC ATCTGGCTCAGGATCAAAAGGGGGCTCTACAGGTTTCAAGAAACTGAGGGTGATTGTTGTGACCAAGTGTGGCACTAAGAAGATTCCTGTCGAAGTGAAT CCATCGGATAATGTTGGAGAGCTTAGAAAAGAGCTGCAAGATTTGCAACAGAAAAATCAATTCCATCTTCCACAAGAAGGGTACTTTTTCATACATAAAC AGGATGTTATGGACGATGATCGATCGTTTCGGTGGCACCGTGTTAACCAGGGTGATACAATTGATGTCTTCAATGGAAGAGTAACCAGTGGATCTTAG
AA sequence Show only first row Show all	>Potri.004G022400.1 pacid=42795910 polypeptide=Potri.004G022400.1.p locus=Potri.004G022400 ID=Potri.004G022400.1.v4.1 annot-version=v4.1 MDVIFEPQRGGPFSIEVGFFDTVSEIKEKVHKYHGIPINKQTLVFHGQVLQDDKDVEYCEILQNSRIQLLITPETDQIPQDKVEQTSHSKKVQLRIKIPS NQTLVPLEMDMSDTVLHLKEKIREIEPVPVKRLVLQSNGAELQDHQSLHECELKYNSEISVNVKPSPSGSGSKGGSTGFKKLRVIVVTKCGTKKIPVEVN PSDNVGELRKELQDLQQKNQFHLPQEGYFFIHKQDVMDDDRSFRWHRVNQGDTIDVFNGRVTSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05230			Ubiquitin-like superfamily pro...		Potri.004G022400 [exp]	0	1
ATCG01300		ATCG01300.1, RP...	ribosomal protein L23 (.1)		Potri.004G104101 [exp]	12.00	1.0000
AT3G17060			Pectin lyase-like superfamily ...		Potri.008G104800 [exp]	15.74	1.0000
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G249800 [exp]	29.49	1.0000
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.011G067150 [exp]	35.31	1.0000
AT3G61690			nucleotidyltransferases (.1)		Potri.011G116501 [exp]	36.12	1.0000
AT5G28780			PIF1 helicase (.1)		Potri.006G157501 [exp]	36.74	1.0000
AT1G02790		PGA4	polygalacturonase 4 (.1)		Potri.010G011200 [exp]	39.47	1.0000
AT1G68610		PCR11	PLANT CADMIUM RESISTANCE 11 (....		Potri.010G127700 [exp]	40.98	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	41.35	1.0000
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Potri.014G093300 [exp]	45.60	0.9395

Compare expression of checked genes

Potri.004G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.