Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15170 808 / 0 TDP1 tyrosyl-DNA phosphodiesterase 1, tyrosyl-DNA phosphodiesterase-related (.1) AT5G07400 62 / 1e-09 FHA forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G111800 [exp] 59 / 1e-08 AT5G07400 881 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018371 [exp] 793 / 0 AT5G15170 797 / 0.0 tyrosyl-DNA phosphodiesterase 1, tyrosyl-DNA phosphodiesterase-related (.1) Lus10032515 [exp] 54 / 5e-07 AT5G07400 931 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1) Lus10043015 [exp] 44 / 0.0007 AT5G07400 608 / 0.0 forkhead-associated domain-containing protein / FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [poplar] [flax] PLD PF06087 [poplar] [flax] Tyr-DNA_phospho Tyrosyl-DNA phosphodiesterase
Representative CDS sequence Show only first row Show all	>Potri.004G022500.1 pacid=42794105 polypeptide=Potri.004G022500.1.p locus=Potri.004G022500 ID=Potri.004G022500.1.v4.1 annot-version=v4.1 ATGACTCACTCACCTATCGCCTACTTAGTTCCACTGAGTCCAAGTCTCGAAGAAAACGCTTCAATCCCTAAACTCCCTCTCTCCAACGGCCAAAACACCA TCGGCAGGAACGACATTTCGGCCTCCGATAAAAGACTCAGCCGTAACCACCTCTCCCTAACCCTATCCCTAACCTCATCCACTATAACCGTGGAGGGGAC TAATCCGGTGGCCGTGGTTAAATCGGGGAAACGGAGGAGGAAACTGAGAGCCGGAGAGAAAGCGGAGATAATTAACGATGATATTATTGAGTTAATCCCT GGTAATTATTTTTATAAGTACGTGTTAATTACTCCTAATAGTAATTTACAGAAGCGAGGTTGTTTCGAGGGAAGAGAAAATGGTATAGGTGAGAGCAAGC GGAAGAAGATTCGAGAAGGGATTAGTAGTAGCTCAAAGGTTGAGATGGAAAGTGGTGGACCGCCGAGGAATTGCGAGGAGGAGGCGATTAGGGATTTTGG TGTTTCGGAGGATGAATTGGCGTTGACATTTCGGCTTTTGAGAGTGAAAGAGTTGCCAGCTTGGGCTAATACGTCTTGTGTTTCGATAAATGATGTGATT AAGGGAGATATACTTGTTGCTATACTTTCGAATTACATGGTGGATATGGATTGGTTACTGTCTGCATGTCCGACAATTGCAAAAGTTCCTAATGTCATGG TTATTCATGGGGAGGGTGATGGTACATTGGAGCATATGAAGAGAAGGAAGCCTGCAAATTGGATTCTGCACAAACCCCGGCTACCCATTTCATTTGGGAC ACACCATTCAAAGGCTATGTTTCTTGTCTATCCTCGAGGAGTGCGAGTTATTGTACATACAGCAAATTTAATATATGTTGACTGGAATAACAAAAGCCAA GGTTTGTGGATGCAAGATTTCCCTTGGAAGGAGGAGAAGAAGCCTGGAAAAGGATGTGGATTTGAAAATGACTTGGTTGATTATCTTAGCATGTTGAAGT GGCCTGAATTTACTGTAAAGTTACCAAACCTTGGGAGAATTAGTATCAATGCATCCTTTTTCAAGAAATTTGATTATAGCCATGCAGCGGTCAGGTTAAT TGCATCTGTTCCTGGATATCATACTGGTGCCAATCTAAGGAAGTGGGGACATATGAAGCTACAAAGTGTTCTTCAAGAATGCACCTTCGACAATGAGTTT AAAAGGTCTCCTCTTGTTTATCAGTTCTCTTCCCTTGGTTCTTTGGATGAAAAGTGGATGACTGAACTGGCCATTTCAATGTCATCTGGATACGCTGAAG ATAAAACACCTCTTGGTCTTGGAGTGCCTCAAATAATATGGCCTACTGTAGAGGATGTCAGATGCTCCTTAGAGGGTTATGCAGCTGGAAATGCTATACC AGGCCCACTAAAGAATGTTGAGAAAGGATTTTTGAAGAAGTATTGGGCTAAATGGAAGGCTTCCCATTCTGGCCGCTGTCGGGCGATGCCTCATATAAAG ACTTTCACCCGCTATAACGGCCAGAAACTTGCTTGGTTTTTGCTTACTTCATCAAATCTTAGCAAAGCAGCCTGGGGGGCTTTGCAGAAGAATAATTCTC AGTTGATGATCCGTTCATACGAGCTGGGAGTGCTCTTTCTACCATCTTCCATAAGAAGATATGGTTCTGGATTTTCTTGCACAAGTAATGGAGGTCCATC CATGGATAATTGTGGATCATTAGTTGATTCTGAAGAGTTGAGAACAACACTAGTGACTCTGAAATGGCAAGGAACAAGCGATTCGGCATCCAAAGTGATT CCATTGCCAGTGCCTTATGAACTCCCTCCTATACCATACAGCTCAGAAGATGTTCCCTGGTCTTGGGACCGGCGCTATAGCAAGAAGGATGTTTACGGCC AGGTTTGGCCAAGGACCGTACAGCTTTATACTTCTCAGGACTAG
AA sequence Show only first row Show all	>Potri.004G022500.1 pacid=42794105 polypeptide=Potri.004G022500.1.p locus=Potri.004G022500 ID=Potri.004G022500.1.v4.1 annot-version=v4.1 MTHSPIAYLVPLSPSLEENASIPKLPLSNGQNTIGRNDISASDKRLSRNHLSLTLSLTSSTITVEGTNPVAVVKSGKRRRKLRAGEKAEIINDDIIELIP GNYFYKYVLITPNSNLQKRGCFEGRENGIGESKRKKIREGISSSSKVEMESGGPPRNCEEEAIRDFGVSEDELALTFRLLRVKELPAWANTSCVSINDVI KGDILVAILSNYMVDMDWLLSACPTIAKVPNVMVIHGEGDGTLEHMKRRKPANWILHKPRLPISFGTHHSKAMFLVYPRGVRVIVHTANLIYVDWNNKSQ GLWMQDFPWKEEKKPGKGCGFENDLVDYLSMLKWPEFTVKLPNLGRISINASFFKKFDYSHAAVRLIASVPGYHTGANLRKWGHMKLQSVLQECTFDNEF KRSPLVYQFSSLGSLDEKWMTELAISMSSGYAEDKTPLGLGVPQIIWPTVEDVRCSLEGYAAGNAIPGPLKNVEKGFLKKYWAKWKASHSGRCRAMPHIK TFTRYNGQKLAWFLLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPSSIRRYGSGFSCTSNGGPSMDNCGSLVDSEELRTTLVTLKWQGTSDSASKVI PLPVPYELPPIPYSSEDVPWSWDRRYSKKDVYGQVWPRTVQLYTSQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	0	1
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.001G097400 [exp]	4.00	0.7896	CPK3,CDPK5.4
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	6.32	0.6974
AT5G40740			unknown protein		Potri.001G337600 [exp]	10.24	0.7127
AT5G51150			Mitochondrial import inner mem...		Potri.012G113700 [exp]	12.96	0.7299
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Potri.007G025300 [exp]	13.74	0.6985
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	18.00	0.6954	Pt-HB1.8
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.005G191500 [exp]	19.59	0.7027	SEC5.1
AT2G16405			Transducin/WD40 repeat-like su...		Potri.009G121100 [exp]	24.37	0.6826
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	44.44	0.6542	Pt-HB1.7
AT5G38880			unknown protein		Potri.004G114600 [exp]	53.06	0.6592

Compare expression of checked genes

Potri.004G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.