Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) AT3G08970 72 / 8e-14 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G79940 70 / 3e-13 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT4G21180 70 / 3e-13 ATERDJ2B DnaJ / Sec63 Brl domains-containing protein (.1) AT5G48030 68 / 1e-12 GFA2 gametophytic factor 2 (.1) AT2G22360 67 / 4e-12 DNAJ heat shock family protein (.1) AT4G39960 66 / 8e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G18140 64 / 2e-11 Chaperone DnaJ-domain superfamily protein (.1) AT1G68370 64 / 2e-11 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT5G49060 64 / 3e-11 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 79 / 2e-16 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 78 / 5e-16 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.016G120000 [exp] 72 / 5e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 69 / 4e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.004G072200 [exp] 68 / 1e-12 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 68 / 1e-12 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.007G094900 [exp] 68 / 1e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.010G036200 [exp] 67 / 3e-12 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.013G058100 [exp] 66 / 3e-12 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020062 [exp] 456 / 5e-163 AT1G61770 411 / 1e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10006760 [exp] 455 / 6e-163 AT1G61770 409 / 5e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10011934 [exp] 77 / 2e-15 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 74 / 1e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 74 / 2e-14 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 73 / 3e-14 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10002852 [exp] 71 / 1e-13 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10003380 [exp] 69 / 7e-13 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030827 [exp] 69 / 9e-13 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10000631 [exp] 68 / 2e-12 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.004G022600.1 pacid=42794968 polypeptide=Potri.004G022600.1.p locus=Potri.004G022600 ID=Potri.004G022600.1.v4.1 annot-version=v4.1 ATGGCGCCACCGGCAACGATTCGGTGTTGCGCAGCAGCACTAACTCTGATGTTCTCTATCCTCATAATCTCTCCATCATCATCAGCTATCTATTGTGACG AAGATGATTGCTACGATCTACTAGGCGTTACGCAAAATGCTAATGCTTCAGAGATAAAAAAAGCTTATTATAAACTCTCGTTGAAACATCACCCGGATAA AAACCCAGATCCGGAGTCCAAAAAGCTGTTTGTGAAAATTGCTAATGCTTATGAGATTTTAAAAGATGAAGCTACAAGAGAGCAATATGATTATGCAATT GCTCATCCAGAGGAGGTGTTTTACAATACGGCTCGTTATTATCATGCATATTATGGTCACAAAACGGATCCACGTTTTGTTCTGGTTGGTCTTCTTCTGA TTCTCTCAGGGTTTCAGTATATGAATGAGATGACAAGGTATAATCAGGCTGTAGCAATGGTCAAGAAAACTCCTGCTTATAAAAATAGACTAAGGGCTTT GGAACTTGAACGCAGTGGAGGAGTTACAAATAAGAAGAAGAGCAACAAGCAGATGGACAAGAAAGTGGAGGAAGATCTCAGCAAAGAACTTGAACTGGAC ATAAAGGGCGCTCATAAACCTTCCATCTGGGAACTTCTTGGTGTCCGATTTATAGTTCTGCCTTACACTATTGGCAAGCTATTACTGTGGAATGGTTGTT GGTTCTGGAGATACAAGGTGAAACAAGCACCGTATTCTTGGGAAGATGCCGTCTACCTAACACAAAGATCCCTGAGAGTGCCTCTTGATGCATGGGGCAG CATTGACGAATCAACAAAGGAAGATCTTGTTCAGAGACGTTTATGGGAGAAGTCTAACTTGGAGACCTATTTTGCAGATCTTCGTAAAGAATCCAAGCGT AGAAGATAG
AA sequence Show only first row Show all	>Potri.004G022600.1 pacid=42794968 polypeptide=Potri.004G022600.1.p locus=Potri.004G022600 ID=Potri.004G022600.1.v4.1 annot-version=v4.1 MAPPATIRCCAAALTLMFSILIISPSSSAIYCDEDDCYDLLGVTQNANASEIKKAYYKLSLKHHPDKNPDPESKKLFVKIANAYEILKDEATREQYDYAI AHPEEVFYNTARYYHAYYGHKTDPRFVLVGLLLILSGFQYMNEMTRYNQAVAMVKKTPAYKNRLRALELERSGGVTNKKKSNKQMDKKVEEDLSKELELD IKGAHKPSIWELLGVRFIVLPYTIGKLLLWNGCWFWRYKVKQAPYSWEDAVYLTQRSLRVPLDAWGSIDESTKEDLVQRRLWEKSNLETYFADLRKESKR RR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61770			Chaperone DnaJ-domain superfam...		Potri.004G022600 [exp]	0	1
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	9.89	0.8610
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060266 [exp]	12.24	0.8523
AT5G10350			RNA-binding (RRM/RBD/RNP motif...		Potri.007G095800 [exp]	18.33	0.8301
AT1G26880			Ribosomal protein L34e superfa...		Potri.004G029400 [exp]	25.86	0.8472
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	32.21	0.8439	Pt-THRRS.2
AT5G16950			unknown protein		Potri.001G082000 [exp]	32.83	0.8259
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	34.17	0.8169
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	34.20	0.8145
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	44.02	0.8127
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	44.89	0.8257

Compare expression of checked genes

Potri.004G022600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.