Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63095 68 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G139100 [exp] 84 / 5e-21 AT3G63095 76 / 4e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G215200 [exp] 80 / 6e-20 AT3G63095 69 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G139200 [exp] 75 / 1e-17 AT3G63095 69 / 2e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028013 [exp] 74 / 1e-16 AT3G63095 37 / 0.009 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012374 [exp] 74 / 9e-16 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028014 [exp] 71 / 2e-15 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012373 [exp] 71 / 2e-15 AT3G63095 77 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029648 [exp] 70 / 1e-14 AT3G63095 87 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G022700.1 pacid=42796368 polypeptide=Potri.004G022700.1.p locus=Potri.004G022700 ID=Potri.004G022700.1.v4.1 annot-version=v4.1 ATGCCCAAGATGGAAAGATTAATCAAGACAACGACACTAACGTTTTTGGCAACCTTCTTATTGTTACTTCTGCCCAACACCTATGCTCACCACCTTCTAC TTCCACATTGCATGAATCAATTTTCTTTAGCAAGCTATGCCTGTGCTATGCTTCCATACACACCATTTCCACATCCATCTCCACCTTCTCCAGCTCCCAG CCCACCCTCACCCTCCCCGGCTCCGCCTTCACCCTCGCTTGATGTTGAGCACGAGCATCGAGAGATGATACATAAAGAGAATCATCATGGATCTATAGAA GAAAACTGTTGCAAATGGTTGGGAGCTTTAGATAAAGAGTGTGTGTGTGGCCTGCTTCATCGCCTGCCTGTATTCCTCTCGAAACCTGCACATCAATATA CCCTTTATGTTAGTAATTCTTGCAACATAACTTATGCTTGTGATGGGTGA
AA sequence Show only first row Show all	>Potri.004G022700.1 pacid=42796368 polypeptide=Potri.004G022700.1.p locus=Potri.004G022700 ID=Potri.004G022700.1.v4.1 annot-version=v4.1 MPKMERLIKTTTLTFLATFLLLLLPNTYAHHLLLPHCMNQFSLASYACAMLPYTPFPHPSPPSPAPSPPSPSPAPPSPSLDVEHEHREMIHKENHHGSIE ENCCKWLGALDKECVCGLLHRLPVFLSKPAHQYTLYVSNSCNITYACDG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.004G022700 [exp]	0	1
					Potri.001G399050 [exp]	1.00	0.9769
					Potri.010G084201 [exp]	1.41	0.9497
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.004G015600 [exp]	3.00	0.9150	Pt-LCOSC2.7
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	3.31	0.8976	SRPP.2
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	3.87	0.8727
					Potri.017G071950 [exp]	7.07	0.9030
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Potri.009G127900 [exp]	10.81	0.8867
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	12.96	0.8774
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.004G022800 [exp]	14.49	0.7989
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.014G156200 [exp]	16.30	0.8248

Compare expression of checked genes

Potri.004G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.