Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 441 / 6e-156 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 274 / 2e-90 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G05600 170 / 2e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 164 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G58660 162 / 6e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 163 / 8e-47 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 161 / 1e-46 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 160 / 7e-46 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G10500 157 / 8e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 155 / 5e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G026700 [exp] 543 / 0 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 384 / 2e-133 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 371 / 2e-128 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 367 / 1e-126 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 354 / 7e-122 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 348 / 2e-119 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 205 / 2e-63 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 173 / 4e-51 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 172 / 1e-50 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007640 [exp] 486 / 1e-173 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 475 / 2e-169 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 458 / 2e-162 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 378 / 4e-131 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 372 / 3e-128 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 367 / 1e-126 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 366 / 2e-126 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10021002 [exp] 179 / 5e-53 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011985 [exp] 167 / 2e-48 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10030934 [exp] 159 / 1e-45 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G022800.3 pacid=42794741 polypeptide=Potri.004G022800.3.p locus=Potri.004G022800 ID=Potri.004G022800.3.v4.1 annot-version=v4.1 ATGGTGGAATCTAGCAACTTTTTGCAGATTATAAACCAGGCTCAAAGGATGGACGTTGACCCACCTTTCCAACTGACCTACAAGACCCTCTTGGAAAAAA CCACAGAAGGGGCAACTGATCATAAAGATGTTGTTGATATCATTGAGGAATGCGAGCTTCCATTGATCGATCTTGGCCGTCTGAATCTTAAGAACTTGGA GAAAGAAAAGTGCAAGTCAGAGATTGCTAGGGCATCACGGGAGTGGGGGTTCTTTCAAGTTGTAAATCATGGGATTTCGCGTGAGATTTTGGACAAAATG AGAAGTGAACAAGTTAAGGTTTTTAAACAACCTTTTAATGAAAAGAGCAAAGAAGAAAAGTTTCTGAATTTCTCTAGGGGGACTTATCGATGGGGGACAC CTACAGCTACTTGCCTTAAGCAGTTGTCATGGTCCGAAGCTTTTCATATTCCTATGAGTGAGATACATGTTTCCAATGGTTTCAGTACTGCTCTCAGCTC GACAATGGAACAATTTGCTACAACAGTTGCCAATCTAGCACAGAAATTAGCTGAGATTTTGGCTGAGAAATTCGGCTGCAAATCTGATTTCATTAAAGAA AATTGTCTGTCAAGCACTTGTTATCTACGAATGAACCGATATCCACCATGTCCAATCCCTTCAGAGGTATTCGGACTCATGCCACACACTGATAGCGACT TTCTCACCATTTTGCACCAAGATGAAGTTGGAGGATTGCAGTTAGTGAAAGATGGGAAATGGTTTGCTGTCAAGCCAAACCCAGAGGCACTGATAATCAA TATCGGAGACTTGTTTCAGGCTTGGAGCAACGATGTTTATAAGAGTGTCGAACACCGTGTTGTCACAAATCCACGAGTTGAAAGATTCTCAACAGCATAT TTCTTCTGTCCTTCCTATGATACGGTGATACAAAGTTGCTATGAGCCTTCAGTTTATAGGAAATTTAGCTTTAAAGAATATAGACAACAAGTGCAAGAGG ATGTTCAAAAATTAGGTCACAAGATAGGGCTCCCTAGGTTTCTTGTATAA
AA sequence Show only first row Show all	>Potri.004G022800.3 pacid=42794741 polypeptide=Potri.004G022800.3.p locus=Potri.004G022800 ID=Potri.004G022800.3.v4.1 annot-version=v4.1 MVESSNFLQIINQAQRMDVDPPFQLTYKTLLEKTTEGATDHKDVVDIIEECELPLIDLGRLNLKNLEKEKCKSEIARASREWGFFQVVNHGISREILDKM RSEQVKVFKQPFNEKSKEEKFLNFSRGTYRWGTPTATCLKQLSWSEAFHIPMSEIHVSNGFSTALSSTMEQFATTVANLAQKLAEILAEKFGCKSDFIKE NCLSSTCYLRMNRYPPCPIPSEVFGLMPHTDSDFLTILHQDEVGGLQLVKDGKWFAVKPNPEALIINIGDLFQAWSNDVYKSVEHRVVTNPRVERFSTAY FFCPSYDTVIQSCYEPSVYRKFSFKEYRQQVQEDVQKLGHKIGLPRFLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.004G022800 [exp]	0	1
					Potri.010G084201 [exp]	4.47	0.8241
					Potri.017G071950 [exp]	13.07	0.8051
AT3G63095			Tetratricopeptide repeat (TPR)...		Potri.004G022700 [exp]	14.49	0.7989
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125451 [exp]	14.69	0.7073
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.014G156200 [exp]	16.52	0.7633
					Potri.001G399050 [exp]	17.23	0.7960
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	21.63	0.7889
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	26.83	0.7348	SRPP.2
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	27.74	0.7134
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.006G221301 [exp]	28.58	0.6344

Compare expression of checked genes

Potri.004G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.