Plant FIBer expression Database

Potri.004G022900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21210 482 / 2e-170 ATRP1 PPDK regulatory protein (.1.2)
AT3G01200 439 / 9e-154 AtRP2 PPDK regulatory protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006758
[exp]
561 / 0 AT4G21210 478 / 2e-168 PPDK regulatory protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03618 Kinase-PPPase Kinase/pyrophosphorylase
Representative CDS sequence
>Potri.004G022900.1 pacid=42794946 polypeptide=Potri.004G022900.1.p locus=Potri.004G022900 ID=Potri.004G022900.1.v4.1 annot-version=v4.1
ATGATTTCTTCTGCCACGTTGGGTCTCTCGAGCCACCGTCTACCACCTCCACCACCACGCTCTTCCACTCCCGAGCCTAACCCCAAATCTCTCTCCGAAC
CTCAGGCTCGGAAACAAAAAGGCAGCCCTCAACTAAACCGGTGGTCGAGAGCTCGGTCCATTCGGTCTGGTAGAAAACTAGACCGGCTGCATCAGCGAAC
CACGCAGCGTCTGGAGCTGAATCCACAAGTTCAAAACCCAAAAGAGAGTGAAAAAAGAGAGGTTAGTTCTTTAACGGGGAGTGACGGATATGATGACGTG
GAGGCTACTTTTGGGAAGGCTATTTTCATGGTTTCCGACGGAACTGGATGGACTGCCGAACATTCCGTTAATGCTTCGTTGGGCCAGTTCGAGCATTGCT
TGGTTGATCGTGGGTGTCCTGTAAATACTCATCTGTTTTCAGGGATTGATGATGTGGAGAGGTTAATGGAGATAATAAAACAAGCAGCAAAAGAAGGTGC
AATGGTGGTCTACACATTAGCTGATTCTTCATTGGCTGAACATGCTAAACAAGTCTGTAAGTTATGGGGCATCCCAGCTACAGATATACTAGGCCCTATA
ACAGAAGCTATTGCTTCACATCTTGGTGTCTTGCCTTCTGGTCTTCCTCGTGGAGCTCCTGGTAGGAATTTTCCTCTTTCAGAGGATTATTTTCGACGAA
TAGAAGCCATTGAATTCACTATTAAACAAGATGATGGGGCATTACCTCAGAACTTGCACAAGGCTGACATTGTTCTTGCTGGAGTTTCTCGGACCGGGAA
GACACCGTTGTCGATTTATTTGGCACAGAAAGGATATAAAGTAGCAAATGTGCCTATTGTAAAGGGTGTGAAATTGCCAAAAAGCCTTTTTGAAGTTGAC
CCCGAAAAGGTTTTTGGTTTGACTATCAATCCTGTAGTGTTACAAACGATAAGGAGAGCAAGGGCGAAGAGTCTGGGTTTCAGTGAAGAAGTGAGGAGTA
ACTACTCTGAGATGGATCATGTCAGAGAGGAGTTGGAATTTGCTCGCAGGACCTTTGCACAGAATCCTGTTTGGCCAGTAATTGAAGTGACAGGAAAAGC
AATTGAAGAAACCGCAGCAGTTATATTAAGGCTATTCCATGATCGGAAACACAAATGTTCAATGCCACGAATCTCAAAACTCTACTAA
AA sequence
>Potri.004G022900.1 pacid=42794946 polypeptide=Potri.004G022900.1.p locus=Potri.004G022900 ID=Potri.004G022900.1.v4.1 annot-version=v4.1
MISSATLGLSSHRLPPPPPRSSTPEPNPKSLSEPQARKQKGSPQLNRWSRARSIRSGRKLDRLHQRTTQRLELNPQVQNPKESEKREVSSLTGSDGYDDV
EATFGKAIFMVSDGTGWTAEHSVNASLGQFEHCLVDRGCPVNTHLFSGIDDVERLMEIIKQAAKEGAMVVYTLADSSLAEHAKQVCKLWGIPATDILGPI
TEAIASHLGVLPSGLPRGAPGRNFPLSEDYFRRIEAIEFTIKQDDGALPQNLHKADIVLAGVSRTGKTPLSIYLAQKGYKVANVPIVKGVKLPKSLFEVD
PEKVFGLTINPVVLQTIRRARAKSLGFSEEVRSNYSEMDHVREELEFARRTFAQNPVWPVIEVTGKAIEETAAVILRLFHDRKHKCSMPRISKLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21210 ATRP1 PPDK regulatory protein (.1.2) Potri.004G022900
[exp]
0 1
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.016G031700
[exp]
3.00 0.8950 Pt-CYP94.6
AT4G38460 GGR geranylgeranyl reductase (.1) Potri.004G179628
[exp]
3.46 0.8847
AT5G22860 Serine carboxypeptidase S28 fa... Potri.001G213400
[exp]
3.46 0.8662
AT4G01995 unknown protein Potri.002G194500
[exp]
5.09 0.8907
AT3G26085 CAAX amino terminal protease f... Potri.008G181400
[exp]
7.00 0.8609
AT2G18630 Protein of unknown function (D... Potri.005G127300
[exp]
7.21 0.8438
AT5G64460 Phosphoglycerate mutase family... Potri.009G080300
[exp]
14.14 0.8707
AT1G31170 ATSRX sulfiredoxin (.1.2.3.4) Potri.012G124500
[exp]
14.28 0.8771
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.008G136040
[exp]
18.70 0.8215
AT2G39190 ATATH8 Protein kinase superfamily pro... Potri.010G221000
[exp]
21.49 0.8400

Potri.004G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.