Plant FIBer expression Database

Potri.004G023400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20600 60 / 5e-11 NDR1 non race-specific disease resistance 1, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT3G20610 58 / 2e-10 non-race specific disease resistance protein, putative (.1)
AT3G20590 49 / 3e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT1G61760 43 / 4e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G418000
[exp]
55 / 3e-09 AT3G20600 144 / 7e-43 non race-specific disease resistance 1, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.011G027400
[exp]
48 / 7e-07 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.009G003800
[exp]
42 / 7e-05 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011162
[exp]
47 / 1e-06 AT3G20600 139 / 3e-41 non race-specific disease resistance 1, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10043067
[exp]
47 / 1e-06 AT3G20600 154 / 7e-47 non race-specific disease resistance 1, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10018376
[exp]
42 / 6e-05 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10041350
[exp]
41 / 6e-05 AT5G22870 94 / 3e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF03168 LEA_2 Late embryogenesis abundant protein
Representative CDS sequence
>Potri.004G023400.1 pacid=42794685 polypeptide=Potri.004G023400.1.p locus=Potri.004G023400 ID=Potri.004G023400.1.v4.1 annot-version=v4.1
ATGTGTGAAACTAAACATTTCCACCTATGGCTTCTCCAAATTATAGGCCTCTTAGGCCTCCTTGCCCTTTGTTTCTGGCTAAGTTTACGTCCCAAAGAGC
CAAATTTCACCATCATCGATTTCTCCATCCCAACTTCAGTTAGTGATGAGAATCCAAGGGCTACCTTCAATTATGTTCTTCAAGTTAAAAATTCAGACAA
AGAGTCCAGCATCTACTACGATGACATTTTGTTGAGTTTCAAATATAAGCAAGACATGGTGGGAAACAATACAATTCCAAGGTTTGATCAAGGCAAAGAC
AATAATGCTTATCAACATGTACCTACAGTGGATATTAATCCACTGGTATGGAGAGCTCTTGCCAAGGAAATTTCTCATGGAACGGCTAAATTGTATGTTG
AGTTAATTACTAGCATTAAATACAAAACTTGGGGTATCAAGAGTAAGCATCATAAGGTCAAGTACCAAGGGGTTCTTCCTCTGGGTTCGGATGGGAAAAT
AAAAGATAAGAAGAAGAGGGTTAAGCTGTATCGTTCCAAGAAATGGAAAATAAGGACTAGTGGATTTCTTTCAGCAAATTAA
AA sequence
>Potri.004G023400.1 pacid=42794685 polypeptide=Potri.004G023400.1.p locus=Potri.004G023400 ID=Potri.004G023400.1.v4.1 annot-version=v4.1
MCETKHFHLWLLQIIGLLGLLALCFWLSLRPKEPNFTIIDFSIPTSVSDENPRATFNYVLQVKNSDKESSIYYDDILLSFKYKQDMVGNNTIPRFDQGKD
NNAYQHVPTVDINPLVWRALAKEISHGTAKLYVELITSIKYKTWGIKSKHHKVKYQGVLPLGSDGKIKDKKKRVKLYRSKKWKIRTSGFLSAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20600 NDR1 non race-specific disease resi... Potri.004G023400
[exp]
0 1
AT3G50160 Plant protein of unknown funct... Potri.006G042300
[exp]
1.73 0.9770
AT1G71140 MATE efflux family protein (.1... Potri.004G093400
[exp]
3.46 0.9592
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050200
[exp]
5.00 0.9664
AT1G14730 Cytochrome b561/ferric reducta... Potri.010G102400
[exp]
5.47 0.9767
AT3G50120 Plant protein of unknown funct... Potri.001G071400
[exp]
8.12 0.9725
AT5G22870 Late embryogenesis abundant (L... Potri.009G003800
[exp]
8.71 0.9674
AT3G61172 LCR8 low-molecular-weight cysteine-... Potri.016G061600
[exp]
9.79 0.9533
Potri.002G015500
[exp]
11.31 0.9075
AT2G27300 NAC NTL8, ANAC040 Arabidopsis NAC domain contain... Potri.009G161300
[exp]
12.24 0.9448
AT3G17730 NAC ANAC057 NAC domain containing protein ... Potri.012G038100
[exp]
13.19 0.9659 NAC020

Potri.004G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.