Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 541 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23180 537 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT3G45860 508 / 3e-172 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 507 / 5e-172 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23160 524 / 8e-172 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 499 / 3e-169 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23280 497 / 2e-168 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 493 / 9e-167 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23150 493 / 1e-166 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G38830 478 / 1e-160 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027501 [exp] 763 / 0 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 595 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G028400 [exp] 594 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 592 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 569 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 569 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 564 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 556 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 552 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 511 / 2e-173 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 499 / 2e-168 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 486 / 7e-164 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 473 / 4e-158 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 459 / 5e-153 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10038552 [exp] 440 / 7e-144 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 437 / 7e-142 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10015094 [exp] 424 / 8e-140 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 421 / 5e-139 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10014812 [exp] 426 / 4e-138 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G023550.1 pacid=42796392 polypeptide=Potri.004G023550.1.p locus=Potri.004G023550 ID=Potri.004G023550.1.v4.1 annot-version=v4.1 ATGAATTCTCCGATCAAACTCTCCAATACAATTCTCCTATACTTGCTTACCCTCTGTATCATTACTAAAGCACAGAACCTCAATAACCCCAATTACCTCC ATCATTTTTGCGACGACACAACCACTTCCACAACAACCTACAAGGACAATTTAAATACTCTTCTCTCATCACTTGCCTCTAATGCCACCAGCAACAGTAT TGGATTCTTCAATGCCTCTGCGGGCCTGGAACCTGATGATGTCTACGGCCTCTTTTTCTGTCGTGGTGATCTTAGCACTGACGTCTGCCAAAATTGCGTG GCCAATGCCACCAAGGATATAGTTCAACGACGTTGTCCAACCCAAAAGGTGGCTTTCATATGGTATGATGAGTGCTTCCTGCGTTACTCGAACAAGATCA TGTTCTCCACCATGGAAAGAGACCCTAATTACACGTTGTGGAATCCAGAAAATGTAGCAGTCCATGCAGATTTTAATCGGGAACTTCTGAACACTATATT CACTGCAGTTAATCGGGCAGCAAATATGCCAGCAGGTGCTAAGAAGTTTCGAGCCACGAAAGCTAATTATACAACGGAACACTATCTGTACGTCTTGGTG CAGTGCACACCAGATCTATCTAGCGGCGATTGTGAACAATGTCTTCTAGCAGCTTATTCTGGGTTGGAAATTTGTTGTAATGAAAAGCGAGGAGGAAGAA TCTTGTTTCCGAGTTGTATTGTTAATTTTGAAACGTATATAAATTACAATGAAACTTATGTCGAGTCTGCAGCCTTGGCACCATCACCTGTACCACAAGG AGACAAAGGAAGTAGCAAAAAAACTTGGATTATAATCGGTGCAACTCTATCTACAATTGTCGGGGTCCTACTGTTAAGTTCTTTCGCTTACACCATGTGG AGAAGGAAGAAAAGAGAGGAAATACGAAACAGCCAGGTGATTCAATTACTTGATATGGAAGGAAGGACAATTGAAGATGACTGCTCGAATGAAATTATGT ATGGGGAGGTGAAATCCCAGGATTCTTTTTTGATCCAGCTAGATATTGTACTCAAAGCTACAAATCAATATTCTAATGAAAATAAACTTGGTCAAGGAGG TTTTGGCCCGGTGTACAAGGGTGTAATGGAAGATGGTAAAGAAATCGCAGTTAAGAGGCTTTCAAGAACTTCTGGTCAAGGATTAAGGGAGTTCATGAAT GAAGTCAATTTAATTGCAAGACTACAACACAGAAACCTTGTCAAACTCTTGGGATGCTGCCTCGAAAAAAATGAAAAGCTGCTGGTCTATGAATACATGC CGAACAAAAGTCTGGATGTCTTTCTCTTTGATTCTGCTATGCGGGTGCAACTTGATTGGCAAAGACGCCTAAGCATTATAAACGGAATAGCTCGGGGGCT CTTGTATTTGCACGAAGATTCACGTCTCAGAATTATTCACAGGGACCTCAAGGCCAGCAACATTTTGCTCGATTATGAGATGAATCCAAAGATATCAGAC TTCGGAATGGCAAGGATTTTCGGTGGAAATCATAGTGAGGCTAATACAAACAGAATTGTTGGAACATATGGATATATGGCTCCTGAATATGCCATGGAAG GGCTATCTTCTGTAAAATCAGACGTATTCAGTTTCGGAGTTCTCATGTTAGAGATAATTAGCGGGAAAAGGAATGGCGGGTTTCATCTTTCGGAAGAAGG GAAAAGCCTCCTCAATTTCACATGGAAGCTGTGGTCTGAAGGTAAAGGACTGGAGTTGATGGACTCGTTACTAGAGAAGTCAAGTGTAGCGACTGAGGTG CTGAAATGCATCCACATTGGGTTGTTGTGTGTGCAAGAAGACCCAGTAGACAGACCAACAATGTCATCAGTTGTTGTTATGTTGGCAGGTGATAACTTTA AAATTCCTATCCCTACAAAACCTGCATTTTCTGTTGGGCGAATTGTTGCGGAAGAAACTACATCATCAAATCAGAGAGTTAGTTCTGTTAACAAGGTCAC TCTTTCTAACGTATTACCAAGGTGA
AA sequence Show only first row Show all	>Potri.004G023550.1 pacid=42796392 polypeptide=Potri.004G023550.1.p locus=Potri.004G023550 ID=Potri.004G023550.1.v4.1 annot-version=v4.1 MNSPIKLSNTILLYLLTLCIITKAQNLNNPNYLHHFCDDTTTSTTTYKDNLNTLLSSLASNATSNSIGFFNASAGLEPDDVYGLFFCRGDLSTDVCQNCV ANATKDIVQRRCPTQKVAFIWYDECFLRYSNKIMFSTMERDPNYTLWNPENVAVHADFNRELLNTIFTAVNRAANMPAGAKKFRATKANYTTEHYLYVLV QCTPDLSSGDCEQCLLAAYSGLEICCNEKRGGRILFPSCIVNFETYINYNETYVESAALAPSPVPQGDKGSSKKTWIIIGATLSTIVGVLLLSSFAYTMW RRKKREEIRNSQVIQLLDMEGRTIEDDCSNEIMYGEVKSQDSFLIQLDIVLKATNQYSNENKLGQGGFGPVYKGVMEDGKEIAVKRLSRTSGQGLREFMN EVNLIARLQHRNLVKLLGCCLEKNEKLLVYEYMPNKSLDVFLFDSAMRVQLDWQRRLSIINGIARGLLYLHEDSRLRIIHRDLKASNILLDYEMNPKISD FGMARIFGGNHSEANTNRIVGTYGYMAPEYAMEGLSSVKSDVFSFGVLMLEIISGKRNGGFHLSEEGKSLLNFTWKLWSEGKGLELMDSLLEKSSVATEV LKCIHIGLLCVQEDPVDRPTMSSVVVMLAGDNFKIPIPTKPAFSVGRIVAEETTSSNQRVSSVNKVTLSNVLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023550 [exp]	0	1
					Potri.008G106450 [exp]	11.31	0.6282
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	11.40	0.7344
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.005G187300 [exp]	16.43	0.6035
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.009G052300 [exp]	18.97	0.5624
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	28.98	0.5336
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	36.12	0.5751
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.014G163301 [exp]	49.41	0.5180
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.010G055200 [exp]	53.47	0.5567
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.008G065000 [exp]	61.57	0.5587
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Potri.005G233300 [exp]	67.08	0.5526

Compare expression of checked genes

Potri.004G023550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.