Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 489 / 3e-165 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 474 / 2e-159 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G05200 473 / 5e-159 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23160 479 / 7e-155 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23150 456 / 2e-152 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G11530 453 / 4e-151 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G38830 449 / 6e-150 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23200 446 / 2e-148 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23270 442 / 2e-147 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT3G45860 440 / 5e-146 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024140 [exp] 1155 / 0 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024000 [exp] 936 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 911 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023964 [exp] 800 / 0 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 550 / 0 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 538 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027900 [exp] 535 / 0 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 534 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 533 / 0 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 479 / 6e-161 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 470 / 1e-157 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 438 / 5e-145 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 426 / 2e-140 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015094 [exp] 412 / 2e-135 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10026629 [exp] 404 / 8e-132 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10037865 [exp] 404 / 3e-130 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 387 / 2e-129 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 402 / 4e-129 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 402 / 2e-128 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G023876.1 pacid=42794170 polypeptide=Potri.004G023876.1.p locus=Potri.004G023876 ID=Potri.004G023876.1.v4.1 annot-version=v4.1 ATGTTCATCCAAAATATAATTATGACCAGGCATGCACTTTTAGCCATGTGTTTATTAATTGTACTGCTTTCAATGCTCTTTCCCATTGTTCTTGCAGACC CTCTACTCAAAATTTGTTCAACTACTGAATATGGTGACTATGATCAGAAAAGCCCATTCGGAAAGAACGTGAAGATTGTCCTTGAAACCTTGCCTTCCAT CACTTCATCAACCGGCTATAACAGCACAGCTATCGGTGAATTCCCTGACAAAGTCACTGGCAAAGCACTTTGTAGGGGAGATATCACTTCGAGTGCTTGT CAGACGTGTTTGAGAGATGCAAGCCAAAAACTGTTGAAAGATTGCGAAAGTAAAGAAGCAATCATATGGTATGAACGATGCCAAATTCACTACTCGTTTC AGAATATAACTTCATTGGATGTTTATGCCGGGAAGTATCCAGACATGGAATCTCATAATAAATCCGTATCAGATCCTGTTCATTTCTATGACAATGTAAG GTTCCTCGTGGACAACCTGTCAAATGAGGCGGCGCTCAATCGTTCAAAGCTCATGTTTGAAACTGGGGAAATCAAGTTTTCAAGGAACGAAACCATATAT GGCCTTGTACAGTGCACTAGAGATATCAGAGAAGATGAGTGTCAGAAATGTTTGAGCTCTGCTTTGATTGATCTCAAGGGATGTTGTTCTTCGAAGCAAG GTGGAATTATTGTTAGTAGGAATTGCAATGTAAGATTTGAGCTGTACAAATACTACAACACCTCAAGTCACTTGATAACATTCCCAACTCCTAAAGGCAG GAGTAATTGGAAGATGGTGGCAATTATTGTGTTTATACCTACAATGGTGCTTACAATAGTCATTGGATCTTCCATTTTCTGTCTGAGGCGAAAAAGAAGA AGACAAAGAGACATGGAAAGAAGTCACCTAACATTATTAAAGGAATCAGCAAGTCCAATAGGGTTCACAACGACAGAAGAAGGTCAGTTGGTAAGTTCTG AGGACCTGCCTTTCATGGACTTAAATACTATCAGAGCAGCCACAGACAACTTCTCCGACTCGAATAAGCTTGGACAAGGTGGGTTTGGCAATGTTTATAA GGGTGTGTTAACAAATGTGAAAGAAATAGCTGTTAAAAGGCTTTCAATAAAGTCATGGCAAGGTTTAGAGGAGTTCAAGAATGAATTCATTCTAATTGAA AAATTACAACACCGAAACCTGGTGAGACTGTTAGGATGTGGCATGGAAGGAGAGGAAAAGCTGCTCATATATGAGTTCATGCCTAACAAAAGCCTTGATA TCTTTATCTTTGATGCCGAAAGACGTGCACAGCTTGATTGGGAAACATATTACAACATAATTAGTGGCATTGCTAGAGGACTTCTTTATCTACATGAGGA TTCTCGGCTTAGAATCATTCACCGGGATTTGAAACCTAGCAATGTTCTACTGGACCACGAAATGGTTGCCAAGATATCAGACTTTGGCATGGCTAGAATT TTCGGCGAAAACCAGAACAAAGCAAACACCAGAAGAGTAGTAGGAACATTCGGATACATGGCTCCAGAGTACGCAATGGAAGGAATATTCTCTGTGAAAT CGGATGTCTTCAGCTTTGGTGTTATACTTCTTGAGATCATAAGTGGGAAAAGAAGCAGTGGTTTTTACCTCACAGAGCATGGCCAGACACTCTTAGCATA TGCATGGAGATTATGGATTGAAGGGAAGGCAATGGAGTTTGCGGATCCTTTGTTGGTGGAAAGAAGCCCAGCAGAAGGGATTTTGAGGTGCATGCATATC GGGCTGTTATGTGTGCAGAAGGATCCAGCAGACAGGCCAACAATGTCATTTGTGGATTTAGCATTGGCAAGCGACCCAATAGCTCTTCCTCAATCACAGC AGCCAGCCTTTTCTCTTGTTAAAATTGTTCCAGCTGACAAGTCTTCATCAACAGATCGTTCAGTGAATCAGATGACAGTCTCTAGTTTCTTACCGAGGTG A
AA sequence Show only first row Show all	>Potri.004G023876.1 pacid=42794170 polypeptide=Potri.004G023876.1.p locus=Potri.004G023876 ID=Potri.004G023876.1.v4.1 annot-version=v4.1 MFIQNIIMTRHALLAMCLLIVLLSMLFPIVLADPLLKICSTTEYGDYDQKSPFGKNVKIVLETLPSITSSTGYNSTAIGEFPDKVTGKALCRGDITSSAC QTCLRDASQKLLKDCESKEAIIWYERCQIHYSFQNITSLDVYAGKYPDMESHNKSVSDPVHFYDNVRFLVDNLSNEAALNRSKLMFETGEIKFSRNETIY GLVQCTRDIREDECQKCLSSALIDLKGCCSSKQGGIIVSRNCNVRFELYKYYNTSSHLITFPTPKGRSNWKMVAIIVFIPTMVLTIVIGSSIFCLRRKRR RQRDMERSHLTLLKESASPIGFTTTEEGQLVSSEDLPFMDLNTIRAATDNFSDSNKLGQGGFGNVYKGVLTNVKEIAVKRLSIKSWQGLEEFKNEFILIE KLQHRNLVRLLGCGMEGEEKLLIYEFMPNKSLDIFIFDAERRAQLDWETYYNIISGIARGLLYLHEDSRLRIIHRDLKPSNVLLDHEMVAKISDFGMARI FGENQNKANTRRVVGTFGYMAPEYAMEGIFSVKSDVFSFGVILLEIISGKRSSGFYLTEHGQTLLAYAWRLWIEGKAMEFADPLLVERSPAEGILRCMHI GLLCVQKDPADRPTMSFVDLALASDPIALPQSQQPAFSLVKIVPADKSSSTDRSVNQMTVSSFLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023876 [exp]	0	1
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	14.07	0.7048
					Potri.019G071125 [exp]	18.00	0.7025
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.015G026500 [exp]	32.68	0.6979
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	40.19	0.6510
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Potri.015G071900 [exp]	61.48	0.5830
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	82.48	0.6012
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	89.76	0.5916
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	92.49	0.5947
					Potri.012G129400 [exp]	95.68	0.5755
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020300 [exp]	98.81	0.5950

Compare expression of checked genes

Potri.004G023876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.