Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 402 / 4e-132 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 385 / 8e-126 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23200 370 / 5e-120 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23280 363 / 2e-117 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23160 373 / 8e-116 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 356 / 1e-114 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G21410 343 / 3e-109 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G11480 339 / 4e-108 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT4G23220 340 / 1e-107 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G11490 335 / 6e-107 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024000 [exp] 1094 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 1093 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024140 [exp] 909 / 0 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023876 [exp] 789 / 0 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027900 [exp] 478 / 7e-163 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 473 / 6e-160 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 448 / 4e-150 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 443 / 3e-148 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 442 / 9e-148 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 342 / 3e-107 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 327 / 4e-107 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 343 / 9e-107 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 334 / 5e-104 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 332 / 1e-103 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 342 / 1e-102 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039725 [exp] 324 / 4e-102 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 328 / 5e-102 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 327 / 1e-101 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10006745 [exp] 323 / 2e-101 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G023964.1 pacid=42795247 polypeptide=Potri.004G023964.1.p locus=Potri.004G023964 ID=Potri.004G023964.1.v4.1 annot-version=v4.1 ATGGTGGTAGATGTAAATTTAGTCATGTTTTTGCTGATCATACCGTTTCCAGCTCTCCCAACCATTACTGTTGCAGACAATCTTTTTACATCTTGCTCCA ACACAAGTAACTACACTCTCAACAGTCCGTTTGACAGCAACCTCAAGCTTCCTCTTGAGAAATTGCCTGCCATGATCACTTCATTAACAGGTTTTAACCA CACCTCTGTTGGAGATCGCCCTGCCAAGGTCTATGGCCAAGCACTGTGCAGAGGTGATGTCAACTCAAGTTCCTGTCAGGCTTGTGTGGAGAAGGCAAGC CAAGAAATCTTTAAGGATTGTAGAAATTATAAAGATGCAATCATATGGTATGAACTTTGCCAAGTTCACTACTCGTTTCAGAATATGACTTCCTTGTATG TTTATACAGGGAAGTATCCAGACTGGGATTCTCAGGAGAAATTTCTATCAGATCCAAAACATTTCTCTGATGTTCTAATCTACTTAATGACTAACCTGTC AACTGAGGCCGCTTGCACACGAGATATCGTAGCAGATGATTGTCAAACATGTTTGACAACTGCTTTGGTTGAACTCAAAGGATGCTGTTCGTCACGGCAA GGTGGAATTATTGTTAGCAGGAATTGCGACGTGAGATTTGAGCTGTACAAATATTACAGTGCCTCGAGTTACTCGTTAACATATCCGAATCCTAAAGGAA GTAATTGGAAGATTGGGATAGTGGCATTTGCAGCATGTGCTCCTGTAGCGGTGATTGTAATTGTCATTGGGTCTTGCATTGTCTGTCTGCTGAAAAAAAG AGGACAACAAAGAGGCGTGGAAAGAAGTCACCTAGCATTATTACAGGAATTGGCCTGTCCAAGAGGGGTCACAATGACAGATGAAGGTCAGTTGGTAAGT TCTGAGGACCTGCCTTTCATGGACTTAACTACTATCAGAGAAGCTACAGACAACTTCTCCGATTCAAATAAGCTTGGACAAGGTGGGTTTGGCACTGTTT ATAAGGGTGTGTTACCAGATGGGAAAGAAATAGCTGTTAAGAGGCTGTCAAGGAAGTCATGGCAAGGCTTAGAGGAGTTCAAGAATGAAGTCAAAGTAAT TGCAAAATTACAGCACCGAAACCTTGTGAGGCTATTGGGATGTGGCATGGAAGGAGACGAAAAGCTGCTCATATATGAATTCATGCATAACAAAAGCCTT GATATCTTTATCTTTGATGCCGAAAGACGCGCACTTCTTGATTGGGAGACATGTTACAACATAGCTGACCATGAAATGGTTGCCAAGATATCAGATTTTG GCATGGCTAGAATTTTCTGCGAAAACCAGAACAAAGCTAACACTAGAAGAGTAGTAGGAACATTCGGATATATGGCTCCGGAGTACGCAATGGGAGGGCT ATTCTCAGTGAAATCAGATGTCTTCAGCTTTGGTGTTATACTACTGGAGATCACAAGTGGGAAAAGAAGTAGTGGCTTTTATCTCTCAGAACATCGCCAG ACACTCTTAGCATATGCGTGGAGATTGTGGAATGAAGGGAGAGAAATGGAATTAGTGGATCCTTCGTTGATGGACAGAAGTCAAACAGAAGGGATTGTGA GGTGCATACATGTTGGGCTGTTATGTGTGCAGGAAGATCCAGCAGACAGGCCAACAATGTCATTTGTGGTTCTAGCTTTGGGAAGTGACCCAATAGCTCT TCCTCAGCCGAAACAACCTGCTTTCTCTCTAGGTAAAATGGTTCCAATCTACAAGTCTTCACCGACGGATCCTTCTGTAAATCAAATGACTGTTTCTGGT ATCGCACCGCGCTGA
AA sequence Show only first row Show all	>Potri.004G023964.1 pacid=42795247 polypeptide=Potri.004G023964.1.p locus=Potri.004G023964 ID=Potri.004G023964.1.v4.1 annot-version=v4.1 MVVDVNLVMFLLIIPFPALPTITVADNLFTSCSNTSNYTLNSPFDSNLKLPLEKLPAMITSLTGFNHTSVGDRPAKVYGQALCRGDVNSSSCQACVEKAS QEIFKDCRNYKDAIIWYELCQVHYSFQNMTSLYVYTGKYPDWDSQEKFLSDPKHFSDVLIYLMTNLSTEAACTRDIVADDCQTCLTTALVELKGCCSSRQ GGIIVSRNCDVRFELYKYYSASSYSLTYPNPKGSNWKIGIVAFAACAPVAVIVIVIGSCIVCLLKKRGQQRGVERSHLALLQELACPRGVTMTDEGQLVS SEDLPFMDLTTIREATDNFSDSNKLGQGGFGTVYKGVLPDGKEIAVKRLSRKSWQGLEEFKNEVKVIAKLQHRNLVRLLGCGMEGDEKLLIYEFMHNKSL DIFIFDAERRALLDWETCYNIADHEMVAKISDFGMARIFCENQNKANTRRVVGTFGYMAPEYAMGGLFSVKSDVFSFGVILLEITSGKRSSGFYLSEHRQ TLLAYAWRLWNEGREMELVDPSLMDRSQTEGIVRCIHVGLLCVQEDPADRPTMSFVVLALGSDPIALPQPKQPAFSLGKMVPIYKSSPTDPSVNQMTVSG IAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	1.00	0.9977
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	2.00	0.9739
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023700 [exp]	3.00	0.9569
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	3.00	0.9759
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	3.46	0.9803
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	4.89	0.9587
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	5.29	0.9378
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	6.70	0.9642
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.003G139850 [exp]	7.34	0.9116
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	7.93	0.9630

Compare expression of checked genes

Potri.004G023964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.