Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 489 / 3e-165 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 469 / 1e-157 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23200 450 / 2e-150 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23280 448 / 2e-149 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 448 / 2e-149 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23160 464 / 3e-149 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23150 445 / 4e-148 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G38830 440 / 4e-146 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21410 436 / 3e-144 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G11480 417 / 1e-137 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023700 [exp] 1285 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G023964 [exp] 1095 / 0 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024140 [exp] 1047 / 0 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023876 [exp] 927 / 0 AT4G23180 489 / 5e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 580 / 0 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027900 [exp] 577 / 0 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024228 [exp] 546 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 542 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 541 / 0 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 493 / 6e-167 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 490 / 2e-165 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007633 [exp] 415 / 2e-136 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018408 [exp] 408 / 7e-131 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 405 / 7e-131 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 389 / 1e-130 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 402 / 3e-129 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 400 / 1e-128 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 396 / 4e-127 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 392 / 4e-127 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.004G024000.1 pacid=42795427 polypeptide=Potri.004G024000.1.p locus=Potri.004G024000 ID=Potri.004G024000.1.v4.1 annot-version=v4.1 ATGATCCTGATGACAACCATAGATGTAAATTTAGTCATGTTTTTGCTGATCATACCGTTTTCAGCTCTCCCAGCCATTACTGTTGCAGACCATCTTGTTA CATCTTGCTCCGATAACACAAGCAACTACACTCTCAACAGTCCATTTGAGAGCAACCTCAAGCTTCTTCTTGAGAACATGCCTTCCATCACTTCATTAAC AGGTTTTAACCACACCTCTGTTGGAGATATCCCTGCCAAGGTCTATGGCCAAGCACTGTGCAGAGGTGATGTCAACTCAAGTTCTTGTCAGGCTTGTGTG GAGAAGGCAAGCCAACAAATCTTTAATGATTGTAGAAATTATAAAGATGCAATCATATGGTATGAACTTTGCCAAGTTCACTACTCGTTTCAGAATATGA CTTCCTTGTATGTTTATACAGGGAAGTATCCAGACTGGGATTCTCATGAGAAATTTCTATCAGATCCAAAACATTTCTCTGATGTTCTAATCTACTTAAT GACTAACCTGTCAACTGAGGCCGCTGTCAATCCTTCCAAGCACATGTTTGCAACTGGGTCAATCAAATTTAGAAGCGAAACCGTATATGGTCATGCACAG TGCACACGAGATATCATACCAGATGATTGTCAAACATGTTTGAAAACTGCTTTGGCTGAACTCAAAGGATGCTGTTCGTCACGGCAAGGTGGAATTATTG TTAGCAGGAATTGCGATGTGAGATTTGAGCTGAACAAATATTACAATGCCTCGAGTTACTTGTTAACATATCCGAATCCTAAAGGAGGTAATTGGAAGAT TGGGATAGTGGCATTTGCAGCATGTGCTCCTGTAGCGGTGATTGTAATTGTCATTGGGTCTTGCATTGTCTGTCTGCTGAAAAAAAGAGGACAACAAAGA GGCGTGGAAAGAAGTCACCTAGCATTATTACAGGAATTGGCCTGTCCAAGAGGGGTCACAATGACAGATGAAGGTCAGTTGGTAAGTTCTGAGGACCTGC CTTTCATGGACTTAACTACTATCAGAGAAGCTACAGACAACTTCTCCGATTCAAATAAGCTTGGACAAGGTGGGTTTGGCACTGTTTATAAGGGTGTGTT ACCAGATGGGAAAGAAATAGCTGTTAAGAGGCTGTCAAGGAAGTCATGGCAAGGCTTAGAGGAGTTCAAGAATGAAGTCAAAGTAATTGCAAAATTACAG CACCGAAACCTTGTGAGGCTATTGGGATGTGGCATGGAAGGAGATGAAAAGCTGCTCATATATGAATTCATGCATAACAAAAGCCTTGATATCTTTATCT TTGATGCCGAAAGACGCGCACTTCTTGATTGGGAGACATGTTACAACATAGCTGGTGGGATTGCTAGAGGACTTCTTTATCTACACGAGGATTCCCGGCT TAGAATCATTCACCGGGATTTGAAACCTAGCAATGTGCTACTAGACCATGAAATGGTTGCCAAGATATCAGATTTTGGCATGGCTAGAATTTTCTGCGAA AACCAGAACAAAGCTAACACTAGAAGAGTAGTAGGAACATTCGGATATATGGCTCCGGAGTACGCAATGGGAGGGCTCTTCTCAGTGAAATCAGATGTCT TCAGCTTTGGTGTTATACTACTGGAGATCACAAGTGGGCAAAGAAGTAGTGGCTTTTATCTCTCAGAACATGGCCAGACACTCTTAGCATATACGTGGAG ATTGTGGAATGAAGGGAGAGAAATAGAATTAGTGGATCCTTCGTTGATGGACAGAAGTCAAACAGAAGGGATTGTGAGGTGCATGCATGTTGGGCTGTTA TGTGTGCAGGAAGATCCATCAGACAGGCCAACAATGTCATTTGTGGTTCTAGCTTTGGGAAGTGACCCAATAGCTCTTCCTCAGCCGAAACAACCTGCTT TCTCTCTTGGTAAAATGGTTCCAATCTACAAGTCTTCACCAACAGATCCTTCTGTAAATCAAATGACTGTTTCTGGTATCGCACCGCGCTGA
AA sequence Show only first row Show all	>Potri.004G024000.1 pacid=42795427 polypeptide=Potri.004G024000.1.p locus=Potri.004G024000 ID=Potri.004G024000.1.v4.1 annot-version=v4.1 MILMTTIDVNLVMFLLIIPFSALPAITVADHLVTSCSDNTSNYTLNSPFESNLKLLLENMPSITSLTGFNHTSVGDIPAKVYGQALCRGDVNSSSCQACV EKASQQIFNDCRNYKDAIIWYELCQVHYSFQNMTSLYVYTGKYPDWDSHEKFLSDPKHFSDVLIYLMTNLSTEAAVNPSKHMFATGSIKFRSETVYGHAQ CTRDIIPDDCQTCLKTALAELKGCCSSRQGGIIVSRNCDVRFELNKYYNASSYLLTYPNPKGGNWKIGIVAFAACAPVAVIVIVIGSCIVCLLKKRGQQR GVERSHLALLQELACPRGVTMTDEGQLVSSEDLPFMDLTTIREATDNFSDSNKLGQGGFGTVYKGVLPDGKEIAVKRLSRKSWQGLEEFKNEVKVIAKLQ HRNLVRLLGCGMEGDEKLLIYEFMHNKSLDIFIFDAERRALLDWETCYNIAGGIARGLLYLHEDSRLRIIHRDLKPSNVLLDHEMVAKISDFGMARIFCE NQNKANTRRVVGTFGYMAPEYAMGGLFSVKSDVFSFGVILLEITSGQRSSGFYLSEHGQTLLAYTWRLWNEGREIELVDPSLMDRSQTEGIVRCMHVGLL CVQEDPSDRPTMSFVVLALGSDPIALPQPKQPAFSLGKMVPIYKSSPTDPSVNQMTVSGIAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	1.00	0.9977
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	1.73	0.9816
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	2.82	0.9859
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	3.46	0.9686
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	4.00	0.9726
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023700 [exp]	4.89	0.9474
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	5.47	0.9704
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	6.92	0.9355
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	7.14	0.9349
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	7.34	0.9598

Compare expression of checked genes

Potri.004G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.