Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 531 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 502 / 3e-170 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23140 475 / 9e-160 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23150 474 / 1e-159 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23130 473 / 4e-159 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23160 490 / 8e-159 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 469 / 6e-158 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23200 461 / 2e-154 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23280 461 / 3e-154 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23220 461 / 2e-153 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024228 [exp] 1320 / 0 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 1284 / 0 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024052 [exp] 1276 / 0 AT4G23180 545 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028100 [exp] 934 / 0 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G027900 [exp] 798 / 0 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 788 / 0 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023550 [exp] 545 / 0 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024000 [exp] 543 / 0 AT4G23180 489 / 4e-165 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 536 / 0 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 488 / 3e-164 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 480 / 1e-161 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10031579 [exp] 462 / 1e-154 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018379 [exp] 461 / 4e-154 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 434 / 1e-143 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 452 / 6e-143 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015094 [exp] 430 / 4e-142 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10026629 [exp] 427 / 2e-140 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 418 / 7e-138 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 418 / 2e-137 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G024101.1 pacid=42794101 polypeptide=Potri.004G024101.1.p locus=Potri.004G024101 ID=Potri.004G024101.1.v4.1 annot-version=v4.1 ATGAGTCACAATTTCCTTCTTGTTAAAAAAAGTATTCAAATTCTTTTGCTGTATTTTTCCATTGCCAACCTTCTTGATCTTGCTTATGCTGATCCTCCAT ACGGACTTTGCTCGAACAATTCTAACTATACAGATAATAGTCCATTTCAAAACAACCTCGAGACCCTCATGTCTTCTCTTTCCTCAAATGCTTCTGTTTC AAAAAATTTCAATACCTCTACTGGAATTGATCCAGACAGAGTGTATGCTCAATATATGTGCCTCAACTATGTAAAAAATGAAAGCTGCCGTACCTGCGTA GCTGCAGCATCTCAAGGTATCAGGCAGCTTTGTCCAGGAGATAAGGAAGCAGTTGTATGGGGAGAGTTATGTCAATTGCGCTACTCGAATCAAAGATTCT TAGGCCACTTGGATGTTTCAGGAAACATTCACCAACAAAATCCAGAGAACATTTCAAATCCAGAAGATCTTAGTTTAGTAGTCAATAAAACCTTGAGTAG TCTTATCAAGAAGGCAGCTTTTGATCCTTCAGCGAATATGTATGCTACTAGAGACGAACCTTTCACTGATAGTGACAGCTTTTTCTCTCTAGTACAGTGC TCTACAGACTTGTCTCCAAATGATTGTTACACATGCCTTGAGGTTGCCGTAAAAAATGTTACGACTTGTTGCTATTTTTCTCGTGGAGCGAGGGTTCTCA GCCGCAGTTGCTATTTAAGGTATGAGTTATATGATTTCTATGACGGCGCAACTGAATCTTCTAAAAGTCCGGTGACCGGAAAAGGCAACGAAAGGGAAAT ATGGATAATTACCATCAGTACTGTGGCATCAACACTTTTGGTGGTAGCAATTTTAGTCTCCTTCTTCTGCCATCTTCCGATGAAATTCAGAATGCGAAAA TGTAAGAAAGAAAATACTAGTCAAGATGGTAAATTTCGTGTGTTTGATCACCCAAACCACAATGATTTCCAGCACCAAGATTTTCAGAGAGATGGCCTTA ATGATCGGGAATCCGGAATTATGGATTTGGCATCCATAAATGCAGCTACTGATAACTTCTCTGAAACAAACTTGCTTGGGCAAGGTGGTTTTGGCCCGGT TTACAAGGGTATACTGAGTGATGGAAAAGAAGTAGCAGTAAAGAGACTTTCGGATTCGTCCGAGCAAGGCAAAAACGAGTTTACAAATGAAGTTCTGCTA ATTATGAAACTTCAGCACAAAAATCTTGTTAAGCTACTCGGTTTTTGTGTTGATCGAGAGGAAAAGCTGCTGGTCTATGAATTCATGCCTAACAACAGCC TAGACGTGGTTCTCTTTGATCCGAGGAAACGTGCTCATCTTAGTTGGAGAAGTCGTATTCATATTATAAATGGGATTGCAAAGGGAACTCTTTATCTCCA TGAGGATTCTAGACTTAGAATCATCCATCGGGACCTGAAAGCTAGCAATATCTTGTTGGACAATAACATGAATCCGAAGATTTCTGATTTCGGAATGGCA AGGATCATGGAAGCTAATGAAGGCGAAACCAATACTGTTAGGATAGTGGGAACATATGGATACATGGCACCAGAGTATGCAATGGAGGGACTTTACTCCA CCAAATCTGATGTTTTTAGTTTTGGAGTTATGCTGCTGGAGATCATAACCGGAAGAAAGAATTCTGGATTCCACAAATCGAAACGTGCTCCTAGCCTCCT AGCTTATGCATGGGAATTATGGAACAATGGAAAGGAACTCGAGATGATAGATCCAGTGTTGGCTGATTCATGCTGCTCTGATGAATTTTCCCGATGCGTG CATATCGGTTTATTATGCGTCCAAGAAGATGCTAGTGAAAGGCCAGCCATGTCGTCCGTTGTTTTAATGCTGAAAAGTGACAACTCAATTGATCTTCCCC AACCTCAACGGCCAGCCATTTTTGCTGGGAGATTTACAGACCACCACGAGGCAAAAGCAAATGATTGTTCTGTCAATGGCTTAACAGTTTCTGATATTTT ACCTCGTTGA
AA sequence Show only first row Show all	>Potri.004G024101.1 pacid=42794101 polypeptide=Potri.004G024101.1.p locus=Potri.004G024101 ID=Potri.004G024101.1.v4.1 annot-version=v4.1 MSHNFLLVKKSIQILLLYFSIANLLDLAYADPPYGLCSNNSNYTDNSPFQNNLETLMSSLSSNASVSKNFNTSTGIDPDRVYAQYMCLNYVKNESCRTCV AAASQGIRQLCPGDKEAVVWGELCQLRYSNQRFLGHLDVSGNIHQQNPENISNPEDLSLVVNKTLSSLIKKAAFDPSANMYATRDEPFTDSDSFFSLVQC STDLSPNDCYTCLEVAVKNVTTCCYFSRGARVLSRSCYLRYELYDFYDGATESSKSPVTGKGNEREIWIITISTVASTLLVVAILVSFFCHLPMKFRMRK CKKENTSQDGKFRVFDHPNHNDFQHQDFQRDGLNDRESGIMDLASINAATDNFSETNLLGQGGFGPVYKGILSDGKEVAVKRLSDSSEQGKNEFTNEVLL IMKLQHKNLVKLLGFCVDREEKLLVYEFMPNNSLDVVLFDPRKRAHLSWRSRIHIINGIAKGTLYLHEDSRLRIIHRDLKASNILLDNNMNPKISDFGMA RIMEANEGETNTVRIVGTYGYMAPEYAMEGLYSTKSDVFSFGVMLLEIITGRKNSGFHKSKRAPSLLAYAWELWNNGKELEMIDPVLADSCCSDEFSRCV HIGLLCVQEDASERPAMSSVVLMLKSDNSIDLPQPQRPAIFAGRFTDHHEAKANDCSVNGLTVSDILPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	1.41	0.9939
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	2.44	0.9906
AT2G46420			Plant protein 1589 of unknown ...		Potri.002G169900 [exp]	2.82	0.9685
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	4.00	0.9726
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.010G010100 [exp]	4.47	0.9719
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	4.89	0.9715
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	6.70	0.9642
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095566 [exp]	7.74	0.9549
					Potri.010G007998 [exp]	8.36	0.9628
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	8.94	0.9464	Pt-GLUR3.3

Compare expression of checked genes

Potri.004G024101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.