Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 675 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 633 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23130 608 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23150 608 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23140 594 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT3G45860 593 / 0 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23160 593 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23280 592 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 588 / 0 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23190 541 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G025800 [exp] 1093 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 1075 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 1071 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 996 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 850 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 796 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 795 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024632 [exp] 745 / 0 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 678 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 573 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 573 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 552 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 515 / 8e-175 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 514 / 1e-174 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 476 / 9e-152 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018377 [exp] 433 / 4e-142 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 430 / 4e-142 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 416 / 9e-137 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 412 / 6e-135 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G024500.1 pacid=42794787 polypeptide=Potri.004G024500.1.p locus=Potri.004G024500 ID=Potri.004G024500.1.v4.1 annot-version=v4.1 ATGAATTCTCTCAAATTATACGTTATCCTGCTCTCGTTGCTTACCCTTGCTATTCTCACTCTAGCACAGGAGGATGCCAATTATCTCTATCATACGTGCC ACAACCCAACCGACCCCACAATAAACAGCACCTACCGAGTCAATCTAAATCTCCTCCTCTCTTCACTTGCCTCAAACGCAACCTGGTATATTACCAATGG ATTCTACAACACCTCTTTCGGGCAGAACACTTATAAAGTGTACGGCCAGTTTATCTGTCGTGGCGATGTTAGCACTACTGTTTGCCAAAACTGTGTCACC TTCGCCACCAAAGATATAGTCCAGCGTTGCCCAATCGGAATAGCGTCCATTGTGTATTACGATGCGTGCATCCTACGTTACTCAAACAGGAACATTTTCT CTAAGGTGGATCAAAGCCCTGGTTTCACCTTGTTAAACACACAGAATATCACAACCGAACCCCAGCGTTTTAACAATCTAGTGGAAACCACCATGAATGA TTTGGCTGCTCGAGCTGCAAGTGCTCCTCCAGGTGCTAAAAAGTTTGCTGTGAACAAAACGTCTTTCGATGCGTTCCGAAATATATACAGCCTTGCCCAG TGCACACCGGATTTATCTAGCTCTGATTGCAATCAATGTCTCAGTGCAGCAATTGCTGATTTGCCCTTTTGCTGCAGCAGCAGGACAGGAGGAAGAGTCT TGTTTCCTAGTTGTTATATTCATTATGAAATTACTGAATTTTATGATGCAACGGCAGTTGCAGCGGAGTCACCGCCTCCTCCTCCTCCGCCCGTGGTTAT TCCTTCTCCTCCACCTCCTCGTTCAGTGACAATACCAGAAGAAAAAGGCAGTGTCTCAACAGTTTTAATTATAGCCATTGTCATTCCGATTGCTGTTTCT ATCGCGCTTTTCTGCATGTGTTTCTGTTTCCTGAGAAGGGCAAGAAAGACCAGAGATTATGTGCCAGAAAATGATGTTGGAGATGAGATTACCACCGAGG AGTCCTTGCAATTTGATTTGAGTACTATAGAAGCTGCCACGAACAATTGTTCCCCTGATAACAAGTTAGGTGAAGGAGGATTTGGTGAGGTTTACAAGGG AACACTTCCTAATGGACAACAAATTGCTGTGAAGAGGCTATCAAGAAATTCTGGACAAGGTGCAGCAGAATTTAAGAATGAGGTGGTATTGGTAGCCAAG CTTCAACACAGGAATCTAGTGAGGTTGCAAGGGTTTTGCTTGGAAAGAGAAGAAAAGATTCTTGTCTATGAATTTGTCAGCAACAAAAGCCTTGACTACT TTCTATTTGACCCTGAAAGGCAAGGACTGTTGGACTGGTCCAGACGGTACAAAATAATAGGAGGCATTGCTCGAGGAATTCTTTATCTTCACGAGGACTC TCGGCTACGAATTATACATCGTGACCTCAAAGCTAGCAATATTCTGCTAGATGGAGATATGAACCCCAAAATCTCAGATTTTGGCTTGGCTAGGATTTTC GTAGTCGATCAAACTCAAGCAAGTACCAATAGAATTGTTGGAACATATGGTTATATGTCCCCAGAATATGCAATGCATGGGCGTTTCTCTGTCAAGTCTG ATGTCTATAGCTTTGGTGTCTTAATCCTTGAGATTATAACCGGAAAGAAGAACAGTTCTTTCTATCAAACAGGCGGTGCTCCAGACCTTGTGAGCTATGT TTGGAATCATTGGAGAGATGGGACACCATTGGAAGTGCTGGATCCAACTCTGACAGATACTTATTCAAGAAACGAAGTAATTAGATGCATCCACATTGGA TTGTTATGTGTTCAAGAAGATCCAGCTATCAGACCCGCAATGGCAACAATTGTTCTCACACTCAATAGTTACTTGGTTACCTTACCATCACCTCAAGAGC CTGCATTTTTTTTCCGTAGCACTATAACAGATGAAGTGAACATTTCAAGCAAGGAATTTCTTTTAGATCAATCTAAAAGAAAGTCTATTGCTTATTCTGT AGATGAAGTTTCAATTACTGAAGTATATCCTCGATAG
AA sequence Show only first row Show all	>Potri.004G024500.1 pacid=42794787 polypeptide=Potri.004G024500.1.p locus=Potri.004G024500 ID=Potri.004G024500.1.v4.1 annot-version=v4.1 MNSLKLYVILLSLLTLAILTLAQEDANYLYHTCHNPTDPTINSTYRVNLNLLLSSLASNATWYITNGFYNTSFGQNTYKVYGQFICRGDVSTTVCQNCVT FATKDIVQRCPIGIASIVYYDACILRYSNRNIFSKVDQSPGFTLLNTQNITTEPQRFNNLVETTMNDLAARAASAPPGAKKFAVNKTSFDAFRNIYSLAQ CTPDLSSSDCNQCLSAAIADLPFCCSSRTGGRVLFPSCYIHYEITEFYDATAVAAESPPPPPPPVVIPSPPPPRSVTIPEEKGSVSTVLIIAIVIPIAVS IALFCMCFCFLRRARKTRDYVPENDVGDEITTEESLQFDLSTIEAATNNCSPDNKLGEGGFGEVYKGTLPNGQQIAVKRLSRNSGQGAAEFKNEVVLVAK LQHRNLVRLQGFCLEREEKILVYEFVSNKSLDYFLFDPERQGLLDWSRRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGLARIF VVDQTQASTNRIVGTYGYMSPEYAMHGRFSVKSDVYSFGVLILEIITGKKNSSFYQTGGAPDLVSYVWNHWRDGTPLEVLDPTLTDTYSRNEVIRCIHIG LLCVQEDPAIRPAMATIVLTLNSYLVTLPSPQEPAFFFRSTITDEVNISSKEFLLDQSKRKSIAYSVDEVSITEVYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	2.00	0.9616
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	3.74	0.9274
AT1G12880		ATNUDT12	nudix hydrolase homolog 12 (.1...		Potri.003G161100 [exp]	4.00	0.9021
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	4.24	0.9473
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	4.47	0.9433
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	4.89	0.9454
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G118062 [exp]	4.89	0.9273
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.014G168400 [exp]	6.24	0.8683
AT5G62150			peptidoglycan-binding LysM dom...		Potri.002G152600 [exp]	10.29	0.8537
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.012G038400 [exp]	10.48	0.9117

Compare expression of checked genes

Potri.004G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.