Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 525 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23130 492 / 7e-171 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23230 477 / 4e-167 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23140 480 / 3e-166 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT3G45860 479 / 7e-166 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G05200 479 / 1e-165 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G11530 476 / 1e-164 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G11470 475 / 2e-164 CRK31 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) AT4G23150 474 / 6e-164 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23280 468 / 2e-161 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024404 [exp] 770 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 750 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 747 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 747 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 669 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 640 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 556 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 553 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G025200 [exp] 552 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 464 / 8e-160 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 463 / 2e-159 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 439 / 4e-150 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 434 / 3e-148 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10006745 [exp] 408 / 1e-137 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026629 [exp] 407 / 2e-137 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 395 / 5e-137 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 412 / 2e-136 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 398 / 8e-133 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10014812 [exp] 400 / 2e-132 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G024632.1 pacid=42795977 polypeptide=Potri.004G024632.1.p locus=Potri.004G024632 ID=Potri.004G024632.1.v4.1 annot-version=v4.1 ATGTGTTTCTGTTTCCTGAGGAGGGCAAGAAAGACCAGAGATTATGTGCCAGAAAATGATGTTGGAGATGAGATTACCACCGAGGAGTCCTTGCAATTTG ATTTGAGTACTATAGAAGCTGCCACGAACAATTTCTCCGCTGATAACAAGTTAGGTGAGGGAGGATTTGGTGAGGTTTACAAGGGAACACTTCCTAATGG ACAACAAATTGCTGTGAAGAGGCTATCAAGAAATTCTGGACAAGGTGCAGCAGAATTTAAGAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGGAAT CTAGTGAGGGTGCAAGGGTTTTGCTTGGAAAGAGAAGAAAAGATTCTTGTCTATGAATTTGTCAGCAACAAAAGCCTTGACTACTTTCTATTTGACCCTG AAAGGCAAGGACTGTTGGACTGGTCCAGACGGTACAAAATAATAGGAGGCATTGCTCGAGGAATTCTTTATCTCCACGAGGACTCGCGGCTACGAATTAT ACATCGTGACCTCAAAGCTAGCAATATTCTGCTAGATGGAGATATGAACCCCAAAATCTCAGATTTTGGCTTGGCTAGGATTTTCGTAGTTGATCAAACT CAAGCAAGTACAATTAGAATTGTTGGAACATATGGTTATATGTCCCCAGAATATGCAATGCATGGGCGTTTCTCTGTCAAGTCTGATGTCTATAGCTTTG GTGTCTTAATCCTTGAGATTATAACCGGAAAGAAGAACAGTTCTTTCTATCAAACAGGGGGTGCTGTAGACCTTGTGAGCTATGTTTGGAAACATTGGAG AGATGGGACACCATTGGAAGTGCTGGATCCAACTCTGACAGATACATATTCAAGAAATGAAGTAATTAGATGCATCCACATTGGATTGTTATGTGTTCAA GAAGATCCAGCAATCAGACCCGCAATGGCAACAATTATTCTCACACTCAATAGTTACTCGGTTACCTTACCATCACCGCAAGAGCCTGCTTTTTTTTTCC ATAGTACTATAACAGATGAAGTGAACATTTCAAGCAAGGAATTTCTTTTAGAACAGTCTAAAAGCAAGTCTGTTGCTTATTCTGTAGATGAAGATTCAAT TACTGAAGTATATCCTCGATAG
AA sequence Show only first row Show all	>Potri.004G024632.1 pacid=42795977 polypeptide=Potri.004G024632.1.p locus=Potri.004G024632 ID=Potri.004G024632.1.v4.1 annot-version=v4.1 MCFCFLRRARKTRDYVPENDVGDEITTEESLQFDLSTIEAATNNFSADNKLGEGGFGEVYKGTLPNGQQIAVKRLSRNSGQGAAEFKNEVVLVAKLQHRN LVRVQGFCLEREEKILVYEFVSNKSLDYFLFDPERQGLLDWSRRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGLARIFVVDQT QASTIRIVGTYGYMSPEYAMHGRFSVKSDVYSFGVLILEIITGKKNSSFYQTGGAVDLVSYVWKHWRDGTPLEVLDPTLTDTYSRNEVIRCIHIGLLCVQ EDPAIRPAMATIILTLNSYSVTLPSPQEPAFFFHSTITDEVNISSKEFLLEQSKSKSVAYSVDEDSITEVYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024632 [exp]	0	1
					Potri.002G155350 [exp]	1.41	0.9067
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.001G084000 [exp]	7.07	0.8659
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G101600 [exp]	7.74	0.8535
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.010G107300 [exp]	8.71	0.8109
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	9.38	0.8873
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	12.32	0.8787
AT4G35030			Protein kinase superfamily pro...		Potri.002G019300 [exp]	16.79	0.8656
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.001G032400 [exp]	19.62	0.8494
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	20.19	0.8549
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Potri.001G099400 [exp]	21.42	0.8267	Pt-ACS2.3,ACS1

Compare expression of checked genes

Potri.004G024632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.