Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 663 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 643 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23130 611 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23150 600 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23160 600 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 599 / 0 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23280 598 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT3G45860 593 / 0 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23140 590 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23190 532 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G025800 [exp] 1129 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 1105 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 1063 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 1021 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 874 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 767 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 765 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024632 [exp] 747 / 0 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 688 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 591 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 553 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 508 / 2e-172 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 469 / 7e-157 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 470 / 2e-149 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018377 [exp] 438 / 3e-144 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 425 / 3e-140 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10006745 [exp] 415 / 5e-136 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026629 [exp] 412 / 1e-134 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018408 [exp] 414 / 5e-133 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G024800.1 pacid=42796364 polypeptide=Potri.004G024800.1.p locus=Potri.004G024800 ID=Potri.004G024800.1.v4.1 annot-version=v4.1 ATGAATTCTCTCAAATTCTACATTATCCTGCTCTCGTTCCTTACCCTTGCTATTATCACTCTAGCACAGGAGGATGCCAATCACCTCTATCATAATTGCC AAAACGCAACCACGTCCACAATAAACAGCACCTACCGAGTCAATCTAAATCTCCTCCTCTCTTCACTTGCCTCAAACGCAACCCGGAATAATACCAATGG ATTCTACAACACCTCTTTCGGGCAGAACACTGATCAAGTGTACGGCCTGTTTATCTGCCGTGGCGATGTTAGCAACACTGTTTGCCAAAATTGTGTCACC TTCGCCACCAAAGATATAGTCCAGCGTTGCCCAATTGGAATAGCGTCCATTGTGTTTTACGATGCGTGCCATCTACGTTACTCAAACAGGAACATTTTCT CTAAGGTGAATCAAAGCCCTGCTTACTACAAGTGGAACTTACAGAATATCACAACCGAACCCCAGCGTTTTAACAATCTAGTGGGAGCCGCCGTGAATGA TTTGGCTGCTCGAGCTGCAAGTGCTCCTCCAGGTGCTAAAAAGTTTTCTGTGAACAAAACGTCTTTCGATGCGTTCCAAAAGATATACAGCCTTGCCCAG TGCACACCGGATTTATCTAGCTCTGATTGCAATCGATGTCTCAGTGCAGCTATAGCTAGATTGCCCATTTGCTGCAGCAGCAAGATAGGAGGAAGAGTCT TGTTTCCTAGTTGTTATATTCATTATGAAATTACTGAATTTTATAATGCAACGGCAGTTGCAGCGGAGTCACCGCCTCCTCCTCCTCCGCCCGTAGCTCT TCCTTCTCCTCCACCTCCTCGTTCAGCGACAATACCAGAAGAAAAAGGCGGTGTCTCAACAGTTTTAATTATAGCCATTGTCATTCCCATTGCTGTTTCT ATCGCGCTTTTGAGCATGTGTTTCTGTTTCCTGAGGAGGGCAAGAAAGACCAGAGATTACGTGCCAGAAAATGATGTTGGAGATGAGATTACCACCGAGG AGTCCTTGCAATTTGATTTGAGTACTATAGAAGCTGCCACGAACAATTTCTCCGCTGATAACAAGTTAGGTGAAGGAGGATTTGGTGAGGTTTACAGGGG AACACTTCCTAATGGACACCAAATAGCTGTGAAGAGGCTATCAAAAAAATCTGGACAAGGTGCAGCAGAATTTAAGAATGAGGTTGTATTGGTAGCCAAG CTTCAACACAGGAATCTAGTGAGGGTGCAAGGGTTTTGCTTGGAAGGAGAAGAAAAGATTCTTGTCTATGAATTTGTCAGCAACAAAAGCCTTGACTACT TTCTATTTGACCATGAAATGCAAGGACTGTTGGACTGGTCCAGACGGTACAAAATAATAGGAGGCATTGCTCGAGGAATTCTTTATCTTCACGAGGACTC TCGGCTACGAATTATACATCGTGACCTCAAAGCTAGCAATATTCTGCTAGATGGAGATATGAACCCCAAAATCTCAGATTTTGGCTTGGCTAGGATTTTC GTAGTTGATCAAACTCAAGCAAGTACCAATAGAATTGTTGGAACATATGGTTATATGTCCCCAGAATATGCAATGCATGGGCATTTCTCTGTCAAGTCTG ATGTCTATAGCTTTGGTGTCTTAATCCTTGAGATTATAACCGGAAAGAAGAACAGTTCCTTCTATCAAACAGGGGGTGCTGCAGACCTTGTTAGCTATGT TTGGAAACATTGGAGAGATGGGACGCCATTGGAAGTGCTGGATCCAACTCTGACAGATACATATTCAAGAAATGAAGTAATTAGATGCATCCACATTGGA TTGTTATGTGTTCAAGAAGATCCAGCTATCAGACCCGCAATGGCAACAATTATTCTCACACTCAATAGTTACTCAGTTACCTTACCATCACCGCAAGAGC CTGCTTTTTTTTTCCATAGCACTATAACAGATGAAGTGAACAGTTCAAGCAAGGAATTTCTTTTAGAACATTCTAAAAGCAAGTCTGTTGCTTATTCTGT AGATGAAGATTCAATTACTGAAGTATATCCTCGATAG
AA sequence Show only first row Show all	>Potri.004G024800.1 pacid=42796364 polypeptide=Potri.004G024800.1.p locus=Potri.004G024800 ID=Potri.004G024800.1.v4.1 annot-version=v4.1 MNSLKFYIILLSFLTLAIITLAQEDANHLYHNCQNATTSTINSTYRVNLNLLLSSLASNATRNNTNGFYNTSFGQNTDQVYGLFICRGDVSNTVCQNCVT FATKDIVQRCPIGIASIVFYDACHLRYSNRNIFSKVNQSPAYYKWNLQNITTEPQRFNNLVGAAVNDLAARAASAPPGAKKFSVNKTSFDAFQKIYSLAQ CTPDLSSSDCNRCLSAAIARLPICCSSKIGGRVLFPSCYIHYEITEFYNATAVAAESPPPPPPPVALPSPPPPRSATIPEEKGGVSTVLIIAIVIPIAVS IALLSMCFCFLRRARKTRDYVPENDVGDEITTEESLQFDLSTIEAATNNFSADNKLGEGGFGEVYRGTLPNGHQIAVKRLSKKSGQGAAEFKNEVVLVAK LQHRNLVRVQGFCLEGEEKILVYEFVSNKSLDYFLFDHEMQGLLDWSRRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGLARIF VVDQTQASTNRIVGTYGYMSPEYAMHGHFSVKSDVYSFGVLILEIITGKKNSSFYQTGGAADLVSYVWKHWRDGTPLEVLDPTLTDTYSRNEVIRCIHIG LLCVQEDPAIRPAMATIILTLNSYSVTLPSPQEPAFFFHSTITDEVNSSSKEFLLEHSKSKSVAYSVDEDSITEVYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	1.00	0.9293
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	2.82	0.8545
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	5.91	0.8020
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	9.94	0.7897
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	14.96	0.8056
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.007G011200 [exp]	15.29	0.7872
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Potri.005G139800 [exp]	15.87	0.7587
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	17.32	0.7900
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027400 [exp]	17.88	0.7678
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Potri.008G175050 [exp]	18.00	0.7501

Compare expression of checked genes

Potri.004G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.