Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 665 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 644 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23160 626 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G11530 612 / 0 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23140 607 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23150 599 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23280 592 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23130 586 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23190 580 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23220 578 / 0 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G026100 [exp] 1256 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 771 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 770 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G028400 [exp] 729 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024404 [exp] 706 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 702 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 687 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 686 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 658 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 641 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 624 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 575 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 568 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10026629 [exp] 540 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031579 [exp] 491 / 7e-166 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015091 [exp] 513 / 8e-166 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031582 [exp] 459 / 8e-154 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015094 [exp] 456 / 2e-152 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10007634 [exp] 445 / 1e-148 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G025200.2 pacid=42795123 polypeptide=Potri.004G025200.2.p locus=Potri.004G025200 ID=Potri.004G025200.2.v4.1 annot-version=v4.1 ATGGCCCATTCTATTTGGCTTTCGGTTTTCTATACGGTTATCTTGTACATTCCTTTAATCGCAGCCCAACAATTTGAATATCGATACCATATATGTACGA GTAATTCTACTTATACTACGAATAGTTCTTTCCCATTAAACCTCAATGCCACTCTCTCTTCTCTCTACGAAAATGCCTCTCGTAGCGATGATTTTGGCAG CATCAGTGTCGGTCAGAATTCTGATAGAGTGTATGCGCTCTTCCTGTGCAGAGGAGATAACTCCCCTGAGTTATGTCAGGGTTGCATCAAGACCACCAGT GAAGCTATCATGATTCGCTGCCCGAATTACAAAGAAGCAATTATTTGGTATGATAGGTGCATGTTACGTTACTCCAACCGTTCTATATTCTCTGTTAAAG AGGAATCGCCGAGAGCATGGCTGTGGAATGTGAATGATATTGGAGATGCTACGGATCGAAATCAATTTAATACCAATTTGGGAGGCTTGATGAACCAGCT TATTACTCGCGCTGCGTCTTCTAGTAATTTGTTTGCAATGGGAGACACAAATGGAACAGCATTTACCAGAATATATGGAATGGTACAATGCACTCCCGAT ATATCTCCATCTCAATGCAGAATATGCTTATCTGGTTGCGTGAGCTTTATTCCTACGTGCTGCAATGGAAAGCAAGGTGGTAATGTTCTCACACCAAGTT GCAGTATGAGGTTTGAAACTTACGCTTTCTACACTGCTCCGCCATCCCCACCCCCTCCTGCAAGTTCCCCATCTCCGCCACCACCACCAGCAACCTCTTT AAATCCCAGTGGAGAAAGGAAGGCTTCATCACGGACAATTGTATACATTTCAGTTCCCACTAGTGCCTTTGTGGTGCTATTGTTCTCCTTATGCTACTGT TATGTGCACAAGAAAGCAAGGAAGGAATACAACGCTATTCAAGAGGGAAATGTTGGGGATGAAATCACTTCGGTCCAATCATTACAATTTCAATTGGGAA CCATTGAAGCTGCTACAAATAATTTTGCTGAAGAGAACAAGATCGGTAAGGGTGGATTTGGCGATGTCTACAGGGGAACACTTCCTAATGGACAACACAT AGCTGTGAAGAGGCTATCAAAAAATTCTGGACAAGGTGCAGCAGAATTTAAGAATGAGGTGGTATTGGTAGCCAGGCTTCAGCATAGAAATCTAGTCAGG CTATTGGGCTATTGCCTGGAAGGGGAAGAGAAGATACTGATCTATGAATTTGTTCCAAACAAGAGCCTCGACTACTTCCTATTTGATCCTGCAAAACAAG GACTGTTGAATTGGTCAAGTCGTTACAAAATCATAGGGGGAATTGCTCGAGGTCTTCTTTATCTTCATGAAGATTCCCGTCTCCGAATCATCCACCGTGA TCTTAAAGCAAGCAATGTTTTGTTGGATGGAGAAATGAACCCCAAGATTGCAGATTTTGGTATGGCCAAGATTTTTGGAGGGGATCAAAGTCAAGGAAAT ACCAGCAAAATCGCTGGAACATTTGGTTACATGCCTCCAGAGTACGCAATGCACGGACAGTTCTCCGTTAAGTCGGACGTGTATAGTTTCGGTGTCTTGA TACTCGAGATTATTAGTGGCAAAAAGAACAGCAGTTTCTATCAATCAGACAATGGCCTGGACCTTGTGAGCTATGCATGGAAACAATGGAAAAATGGGGC AGTACTGGAACTAATGGATTCAAGCTTCGGAGATTCTTACTCCAGAAATGAGATCACTAGATGCGTCCATATTGGCTTATTGTGTGTTCAAGAAGATCCA AACGATAGACCCACGTTGTCAACAATAGTTCTCATGCTCACTAGTTTCTCTGTAACGCTACCATTGCCTCGAGAGCCGGCATACTTTGGGCAAAGCAGGA CCGTCCCGAAGTTTCCAACAACAGAGCTGGAGTCTGACCGATCTACTTCCAAGTCGAAGCCTTTGTCCGTGAATGATATGTCTATCACAGAACTATATCC TCGTTAA
AA sequence Show only first row Show all	>Potri.004G025200.2 pacid=42795123 polypeptide=Potri.004G025200.2.p locus=Potri.004G025200 ID=Potri.004G025200.2.v4.1 annot-version=v4.1 MAHSIWLSVFYTVILYIPLIAAQQFEYRYHICTSNSTYTTNSSFPLNLNATLSSLYENASRSDDFGSISVGQNSDRVYALFLCRGDNSPELCQGCIKTTS EAIMIRCPNYKEAIIWYDRCMLRYSNRSIFSVKEESPRAWLWNVNDIGDATDRNQFNTNLGGLMNQLITRAASSSNLFAMGDTNGTAFTRIYGMVQCTPD ISPSQCRICLSGCVSFIPTCCNGKQGGNVLTPSCSMRFETYAFYTAPPSPPPPASSPSPPPPPATSLNPSGERKASSRTIVYISVPTSAFVVLLFSLCYC YVHKKARKEYNAIQEGNVGDEITSVQSLQFQLGTIEAATNNFAEENKIGKGGFGDVYRGTLPNGQHIAVKRLSKNSGQGAAEFKNEVVLVARLQHRNLVR LLGYCLEGEEKILIYEFVPNKSLDYFLFDPAKQGLLNWSSRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNVLLDGEMNPKIADFGMAKIFGGDQSQGN TSKIAGTFGYMPPEYAMHGQFSVKSDVYSFGVLILEIISGKKNSSFYQSDNGLDLVSYAWKQWKNGAVLELMDSSFGDSYSRNEITRCVHIGLLCVQEDP NDRPTLSTIVLMLTSFSVTLPLPREPAYFGQSRTVPKFPTTELESDRSTSKSKPLSVNDMSITELYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025200 [exp]	0	1
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	2.82	0.9464
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	6.92	0.9454
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026100 [exp]	7.61	0.8993
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140500 [exp]	12.12	0.9439
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.008G007000 [exp]	13.00	0.9256
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	13.03	0.9408
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	17.02	0.9307	Pt-IFS1.43
AT3G49200			O-acyltransferase (WSD1-like) ...		Potri.001G304600 [exp]	17.32	0.9201
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.004G101400 [exp]	22.73	0.9039
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Potri.004G065000 [exp]	23.23	0.9119	GA2.9,GA2ox3

Compare expression of checked genes

Potri.004G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.