Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 648 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G05200 632 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 603 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23160 598 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23130 598 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23140 598 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23280 584 / 0 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 578 / 0 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT3G45860 572 / 0 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23190 539 / 0 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024800 [exp] 1103 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 1100 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 1082 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 983 / 0 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 843 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024900 [exp] 764 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 760 / 0 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024632 [exp] 750 / 0 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 672 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 573 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10018379 [exp] 541 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 503 / 4e-170 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 461 / 1e-153 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 468 / 2e-148 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 429 / 2e-141 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018377 [exp] 429 / 3e-140 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031582 [exp] 420 / 2e-138 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10006745 [exp] 407 / 1e-132 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026629 [exp] 405 / 6e-132 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G025800.1 pacid=42795696 polypeptide=Potri.004G025800.1.p locus=Potri.004G025800 ID=Potri.004G025800.1.v4.1 annot-version=v4.1 ATGAGGGCTGCTAGCTTGCTGATCACCAAAAAGATGAACTCTCTCAAAGTCAACGTTATCCTGCTCTCGTTGCTTACCCTTGCTATTATCACTCTAGCAC AGGAGGATGCCAATTACCTCTATCATAATTGCCATAACGCAACCACCTCCACATTAAACAGCACCTACCGAGTCAATCTAAATCTCCTCCTCTCTTCACT TGCCTCGAATGCAACCCGGAATAATACCATTGGATTCTACAACACCTCTTTCGGGAAGAACACTGATCAAGTGTACGGCCTGTTTATCTGCCGTGGCGAT GTTAGAAACACTGTTTGCCAAAATTGTGTCACCTTCGCCACCAAAGATATAGTCCAGCGTTGCCCAATCGGAATAGCGTCCATTGTGTATTACGATGCGT GCATCCTACGTTACTCTAACGTGAACTTTTTCTCTAAGGTGGATCAAAACCCTGGTTACTACATGTGGAACTTACAGAATATCACAACCGAACCCCAGCG TTTTAACAATCTAGTGGGAACCACCGTGAATGATTTGGCTGCTCGAGCTGCAAGTGCTCCTCCAGGTGCTAAAAAGTTTGCTGTGAACAAAACGTCTTTC GATGCGTTCCGAAATCTATACAGCCTTGCCCAGTGCACACCGGATTTATCTAGCTTTGATTGCAATCAATGTCTCAGTGCAGCAATTGGTGATTTGCCCT TTTGCTGCAGCAGCAGGACAGGAGGAAGAGTCTTGTTTCCTAGTTGTTATATTCATTATGAAATTAATTTATTTTATAATGCAACGGCAGTCGCAGCGGA CTCACCGCCTCTTCCACCTCCGCCCGTGGCTCTTCCTTCTCCCCCACCTCCTCTTTCAGCGACAAGACCAGAAGAAAAAGGCGGTGTCTCAACAATTTTA ATTATAGCCATTGTCATTCCCATTGCTGTTTCTATCGCGCTTTTCAGCATGTGTTTCTGTTTCCTGAGGAGGGCAAGAAAGACCAGAGATTATATGCCAG AAAATGATATTGGAGATGAGATTACCACCGAGGAGTCCTTGCAATTTGATTTGAGTACTATAGAAGCTGCCACGAACAATTTCTCCGCTGATAACAAGTT AGGTGAAGGAGGATTTGGTGAGGTTTACAGGGGAACACTTCCTAATGGACATCAAATTGCTGTGAAGAGGCTATCAAGAAATTCTGGACAAGGTGCTGCA GAATTTAAGAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGGAATCTAGTGAGGGTGCAAGGGTTTTGCTTGGAAAGAGAAGAAAAGATTCTTGTCT ATGAATTTGTCAGCAACAAAAGCCTTGACTACTTTCTATTTGACCCTGAAAGGCAAGGACTGTTGGACTGGTCCAGACGGTACAAAATAATAGGGGGCAT TGCTCGGGGAATTCTTTATCTTCACGAGGACTCTCGACTAAGAATTATACATCGTGACCTCAAAGCCAGCAATATTCTGCTAGATGGAGATATGAACCCC AAAATCTCAGATTTTGGCTTGGCTAGGATTTTCGTAGTCGATCAAACTCAAGCAAGTACCAATAGAATTGTTGGAACATATGGTTATATGTCCCCAGAAT ATGCAATGCATGGGCGTTTCTCTGTCAAGTCTGATGTCTATAGCTTTGGTGTCTTAATCCTTGAGATTATAACCGGAAAGAAGAACAGTTCTTTCTATCA AACAGGGGGTGCTGTAGACCTTTTGAGCTATGTTTGGAAACATTGGAGAGATGGGACACCATTGGCAGTGCTGGATCCAACTCTGACAGATACATATTCA AGAAATGAAGTAATTAGATGCATCCACATTGGATTGTTATGTGTTCAAGAAGATCCAGCTATCAGACCCGCAATGGCAACAATTATTCTCACACTCAATA GTTACTCAGTTACCTTACCATCACCGCAAGAGCCTGCTTTTTTAGTCCATAGCACTATAACAGATGAAGTGAACAGTTCAAGCAAGGAATTTCTTTTAGA ACATTCTAAAAGGAAGTCTGTTGCTTATTCTGTAGATGAAGATTCAATTACTGAAGTATATCCTCGATAG
AA sequence Show only first row Show all	>Potri.004G025800.1 pacid=42795696 polypeptide=Potri.004G025800.1.p locus=Potri.004G025800 ID=Potri.004G025800.1.v4.1 annot-version=v4.1 MRAASLLITKKMNSLKVNVILLSLLTLAIITLAQEDANYLYHNCHNATTSTLNSTYRVNLNLLLSSLASNATRNNTIGFYNTSFGKNTDQVYGLFICRGD VRNTVCQNCVTFATKDIVQRCPIGIASIVYYDACILRYSNVNFFSKVDQNPGYYMWNLQNITTEPQRFNNLVGTTVNDLAARAASAPPGAKKFAVNKTSF DAFRNLYSLAQCTPDLSSFDCNQCLSAAIGDLPFCCSSRTGGRVLFPSCYIHYEINLFYNATAVAADSPPLPPPPVALPSPPPPLSATRPEEKGGVSTIL IIAIVIPIAVSIALFSMCFCFLRRARKTRDYMPENDIGDEITTEESLQFDLSTIEAATNNFSADNKLGEGGFGEVYRGTLPNGHQIAVKRLSRNSGQGAA EFKNEVVLVAKLQHRNLVRVQGFCLEREEKILVYEFVSNKSLDYFLFDPERQGLLDWSRRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNP KISDFGLARIFVVDQTQASTNRIVGTYGYMSPEYAMHGRFSVKSDVYSFGVLILEIITGKKNSSFYQTGGAVDLLSYVWKHWRDGTPLAVLDPTLTDTYS RNEVIRCIHIGLLCVQEDPAIRPAMATIILTLNSYSVTLPSPQEPAFLVHSTITDEVNSSSKEFLLEHSKRKSVAYSVDEDSITEVYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211700 [exp]	1.41	0.8959
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	3.46	0.8950
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	4.58	0.8621
AT5G27020			unknown protein		Potri.005G021500 [exp]	4.69	0.8312
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	9.59	0.8740
AT3G07690			6-phosphogluconate dehydrogena...		Potri.003G203800 [exp]	10.34	0.7695
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	10.67	0.8080
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	10.95	0.8062
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	11.22	0.8419
AT1G32910			HXXXD-type acyl-transferase fa...		Potri.007G003800 [exp]	13.26	0.8502

Compare expression of checked genes

Potri.004G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.