Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23130 573 / 0 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G38830 528 / 2e-180 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23180 503 / 1e-170 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G11530 495 / 2e-167 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23140 485 / 2e-163 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23280 475 / 8e-160 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23270 473 / 3e-159 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23230 464 / 1e-157 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23190 467 / 1e-156 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G23160 483 / 3e-156 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G024900 [exp] 741 / 0 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 629 / 0 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026100 [exp] 619 / 0 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 557 / 0 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024500 [exp] 548 / 0 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024632 [exp] 545 / 0 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 543 / 0 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 541 / 0 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 537 / 0 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007632 [exp] 478 / 1e-160 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 472 / 2e-158 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 444 / 2e-147 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 434 / 2e-143 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 410 / 5e-134 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10033752 [exp] 396 / 3e-133 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 406 / 1e-132 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 410 / 1e-131 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 406 / 1e-130 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 401 / 7e-129 AT4G21380 942 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G025900.1 pacid=42794268 polypeptide=Potri.004G025900.1.p locus=Potri.004G025900 ID=Potri.004G025900.1.v4.1 annot-version=v4.1 ATGAAGTCTCTCAATTTCTTCATAGCTCTACTCTCCTTGCTTAGCCTTGCTACTATCACTAAATCACAGGACCCTTCTTATCTCTATCGTTCATGCAGTA ACGAGACAACTTACACGAGAAACAGCACTTACCAAGCCAATTTAAATCTCCTTCTTTCTTCACTTGTGTCCAATGCAACCCGCAATAATCTTAATGGATT CTACAACTCCTCTTTAGGGCTGGACCCTGATGATGTTTATGGCCTGTTTCTTTGCCGTGGCGACGTTAACAAAAATGCTTGCCAGAATTGTGTCGCCTTG GCTGCCAAAGAGGCAATCCAACGTTGCCCAGTTGAAAAAGTGGTCGTTTTATGGTACGATTTGTGCTTCTTGCGCTACTCAAACAGGGCTTTTTTCGCTA CCATGGACCAAGACCCAGGAGTGACCTTGTATAACACTCAGAATATCGCATACGAACCTGAACGTTTTAACCGACTAGTGGCTACCTCCATGAATGATAC AGCCACTCAGGCTACAAGTGCTACTTCAGGAGCTAAAAAGTTTGCAGCTAAAGAAGTATATTTTAATGAGTTTCTAAACTTGTACAGCCTTGTTCAGTGC ACACCGGACTTGTCAAGCTCGGATTGTAATCGATGTCTTAGGATAGCTATTTCTAGTTTGACCAGTTGTTGTGGCCAAAGGGCAGGAGCAAGAGTCCTGT ATCCAAGTTGTAATATTCGGTATGAAACCTATGAGTTTTATAATACAACAGCAGTGGCGGCAGAGTCGCCACCTCCTCCTCCGCCCGTGATTCGTGCTCC TCCGCCCTCTCCAGTGTCGGGATCAAAAGGAAAAGTCCGTGTCTCAACAGTTGTAATTATTGCCATTGTCGTTCCTGTTGGTGTTTCTATTGCGCTTTTC TGCCTGGGTTTCGGTTTCCTGAGAAGAAGGGGAAGAAAGAACAGAGATTCGGTGAAAGAAAAGGATGTTGGAGATGAGATTTCAACTGAGGAGTCCTTGC AATTTGATTTGAGTACTATAGAAGCTGCCACAAACAATTTCTCCCCCGACAACAAGTTAGGCGAAGGAGGGTTTGGTGAGGTTTACAAGGGAACATTTCC TAATGGACAACACATAGCTGTGAAGAGGCTATCAAAATATTCTGGACATGGTGCAGCAGAATTTAAGAATGAGATCGTATTGGTAGCCAAGCTTCAGCAT AGAAATCTAGTTAGGCTATTGGGCTATTGCCTGGAAGGGGAAGAGAAGTTACTAATATATGAATTTGTTCCCAATAAAAGCCTCGACTACTTCCTATTTG ATCCTGCAAAACAAGGACTGTTGGATTGGTTAAGTCGTTACAAAATCATAGGGGGGATTGCTCGAGGTCTCCTTTATCTTCACGAAGATTCCCGTCTCCG AATTATCCACCGTGATCTTAAAGCAAGCAATGTTTTGTTGGATGGGGAAATGAATCCCCGGATTGCAGATTTTGGTGTGGCAAAGATTTTTGGAGTCGAT CAAAGTCAAGGAATTACAAGCCGAATCGCTGGAACATTTGGTTACATGTCTCCGGAGTACGCAATGCACGGACAGTACTCCGTTAAGTCAGACGTGTATA GTTTCGGTGTCTTGATACTCGAGATTATCAGTGGCAAAAAGAACAGCAGTTTCTATCAATCAGACAATGGCATGGGCCTTCTAAGATATGCATGGCAGCA ATGGAAAAATGGGGCAGCACTGGAACTAGTGGATCCAAGCTTAGGAGATTCTTACTCTAGAAATGAGATCACTAGATGCCTCCATATTGCCTTACTGTGT GTCCAAGAAGATCCAAACGATAGACCCACATTGACATCAGTAGTTCTCATGCTCACTAGTTTCTCGATATCGCTACCATTGCCTCGAGAGCCATCAAGCT TTGAGCAAAGCATGACCATCTCAAGCTTGCCATTAACAGAGCTGGAGTCTGACCAATCTAATATCAAGTCGAAGCCTTTGTCCGTGAATGATGTGTCTAT CACAGAACTATATCCTCGTTAA
AA sequence Show only first row Show all	>Potri.004G025900.1 pacid=42794268 polypeptide=Potri.004G025900.1.p locus=Potri.004G025900 ID=Potri.004G025900.1.v4.1 annot-version=v4.1 MKSLNFFIALLSLLSLATITKSQDPSYLYRSCSNETTYTRNSTYQANLNLLLSSLVSNATRNNLNGFYNSSLGLDPDDVYGLFLCRGDVNKNACQNCVAL AAKEAIQRCPVEKVVVLWYDLCFLRYSNRAFFATMDQDPGVTLYNTQNIAYEPERFNRLVATSMNDTATQATSATSGAKKFAAKEVYFNEFLNLYSLVQC TPDLSSSDCNRCLRIAISSLTSCCGQRAGARVLYPSCNIRYETYEFYNTTAVAAESPPPPPPVIRAPPPSPVSGSKGKVRVSTVVIIAIVVPVGVSIALF CLGFGFLRRRGRKNRDSVKEKDVGDEISTEESLQFDLSTIEAATNNFSPDNKLGEGGFGEVYKGTFPNGQHIAVKRLSKYSGHGAAEFKNEIVLVAKLQH RNLVRLLGYCLEGEEKLLIYEFVPNKSLDYFLFDPAKQGLLDWLSRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNVLLDGEMNPRIADFGVAKIFGVD QSQGITSRIAGTFGYMSPEYAMHGQYSVKSDVYSFGVLILEIISGKKNSSFYQSDNGMGLLRYAWQQWKNGAALELVDPSLGDSYSRNEITRCLHIALLC VQEDPNDRPTLTSVVLMLTSFSISLPLPREPSSFEQSMTISSLPLTELESDQSNIKSKPLSVNDVSITELYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23130		RLK6, CRK5	RECEPTOR-LIKE PROTEIN KINASE 6...		Potri.004G025900 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024900 [exp]	1.00	0.9877
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125901 [exp]	2.64	0.9556
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	15.65	0.9331
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	20.34	0.9522
AT4G31980			unknown protein		Potri.003G209832 [exp]	25.09	0.9562
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	31.62	0.9543
AT4G27300			S-locus lectin protein kinase ...		Potri.011G126251 [exp]	33.57	0.9106
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060650 [exp]	37.49	0.9361
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.005G047800 [exp]	38.98	0.9432
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.010G092400 [exp]	42.98	0.9488

Compare expression of checked genes

Potri.004G025900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.