Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 353 / 4e-116 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23270 342 / 2e-112 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23280 341 / 9e-112 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23200 273 / 1e-85 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23260 253 / 8e-78 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G23190 251 / 3e-77 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G21230 247 / 1e-75 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G11480 246 / 2e-75 CRK32 cysteine-rich RLK (RECEPTOR-like protein kinase) 32 (.1) AT4G11490 243 / 5e-74 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G04570 238 / 9e-73 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G025001 [exp] 758 / 0 AT4G05200 465 / 4e-158 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025800 [exp] 453 / 5e-155 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024500 [exp] 432 / 6e-147 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024800 [exp] 411 / 8e-139 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 408 / 1e-137 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024900 [exp] 408 / 2e-137 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 399 / 6e-134 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025650 [exp] 391 / 3e-131 AT4G23180 646 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026200 [exp] 305 / 7e-98 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015092 [exp] 214 / 2e-63 AT4G23180 397 / 1e-130 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031578 [exp] 212 / 9e-63 AT4G23180 422 / 5e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10031582 [exp] 208 / 6e-61 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007632 [exp] 196 / 2e-56 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031579 [exp] 194 / 1e-55 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018382 [exp] 192 / 6e-55 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007634 [exp] 190 / 3e-54 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018377 [exp] 190 / 8e-54 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 188 / 3e-53 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10006745 [exp] 184 / 6e-52 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G026000.3 pacid=42794895 polypeptide=Potri.004G026000.3.p locus=Potri.004G026000 ID=Potri.004G026000.3.v4.1 annot-version=v4.1 ATGAAGTCTCTCAATTTCTTCATAGTCCTACTCTCCTCGCTTAGCCTTGCTACTATCACTAAATCACAGGACCCTTCTTTTCTCTATAATTCATGCAGTA ACGATACTACTTACACGAGAAACAGCACTTACCAAGCCAATTTAAATCTCCTTCTTTCTTCACTTGTGTCCAATGCAACCCGCAATAATCTTGATGGATT CTACAACTCCTCTATAGGGCTGGACCCTGATGATGTTTATGGCCTGTTTCTTTGCCGTGGCGACGTTAACAAAAATGCTTGCCAGAATTGTGTCGCCTTG GCTGCCAAAGAGGCAATCCAACGTTGCCCAGTTGAAAAAGTGGTCATTTTATGGTACGATTTGTGCCTCTTGCGCTGCTCAAACAGGGCTTTTTTCGCTA CCATGGACCAAGACCCTGGAGAGTTCCTGTTTAAATCTGATCAGAATATCGCAGACGAACCTGAACGCTTTAACCGGCTAGTGGCAACCACCATGAATGA TACAGTCACTCAGGCTACAATTGCTACTTCAGGAGGTAAAAAGTTTGCAGTTGAAGAAGTATATTTTACCAAGTCTCTAAACTTGTACAGCCTTGCGCAG TGCACACCGGACTTGTCAAGCTCGGATTGTAATCGATGTCTTAGGATAGCTATTTCTATTTTGCCTAGTTGCTGTAGCCAAAAGCCAGGAGCAAGCATCC TATATCCAAGTTGTAATGTCCGGTATGAAACCTTTAAGTTTTATAATATAACAACGGTTGCGGCAAAGCCACCACCTCCTCCTCCCTCTCCATTGACAAG ACCAAAAGATGGAGATGAGATTTCAACTGTGGAGTCCTTGCAATTTGATTTGAGTTCTATAGAAGCTGCCACAAACAATTTCTCCCCTGATAACAAGTTA GGTGAAGGAGGATTTGGTGAGGTTTACAAGGGAACACTTCCTCATGGACAACAAATAGCTGTGAAGAGGCTATCAAAATATTCTGGACAAGGTGCAGCAG AATTTAAGAATGAGGTCGTGTTGATAGCCAAGCTTCAGCATAGAAATCTAGTCAGGCTATTGGGCTATTGCCTGCAAGGGGCAGAGAAGATACTAATCTA TGAGTTTGTTCCCAACAAGAGCCTCGACCACTTCCTATTTGATCCTGGAAAACAAGGACTGTTGGATTGGTCAATTCGGTACAAAATCATTGGGGGCATT GCTTGA
AA sequence Show only first row Show all	>Potri.004G026000.3 pacid=42794895 polypeptide=Potri.004G026000.3.p locus=Potri.004G026000 ID=Potri.004G026000.3.v4.1 annot-version=v4.1 MKSLNFFIVLLSSLSLATITKSQDPSFLYNSCSNDTTYTRNSTYQANLNLLLSSLVSNATRNNLDGFYNSSIGLDPDDVYGLFLCRGDVNKNACQNCVAL AAKEAIQRCPVEKVVILWYDLCLLRCSNRAFFATMDQDPGEFLFKSDQNIADEPERFNRLVATTMNDTVTQATIATSGGKKFAVEEVYFTKSLNLYSLAQ CTPDLSSSDCNRCLRIAISILPSCCSQKPGASILYPSCNVRYETFKFYNITTVAAKPPPPPPSPLTRPKDGDEISTVESLQFDLSSIEAATNNFSPDNKL GEGGFGEVYKGTLPHGQQIAVKRLSKYSGQGAAEFKNEVVLIAKLQHRNLVRLLGYCLQGAEKILIYEFVPNKSLDHFLFDPGKQGLLDWSIRYKIIGGI A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	0	1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	1.00	0.9905
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	9.79	0.8495
					Potri.013G075801 [exp]	10.19	0.8582
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	11.61	0.8290
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	11.83	0.8463
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.005G087850 [exp]	13.60	0.8335
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.018G057000 [exp]	15.87	0.8995
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	24.57	0.7990
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G127200 [exp]	28.42	0.8083
AT2G33170			Leucine-rich repeat receptor-l...		Potri.001G053400 [exp]	28.77	0.7807

Compare expression of checked genes

Potri.004G026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.