Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21410 610 / 0 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT4G23180 582 / 0 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G38830 571 / 0 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G21400 560 / 0 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT4G23160 559 / 0 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23140 550 / 0 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G05200 547 / 0 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 537 / 0 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G00970 536 / 0 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23230 520 / 1e-179 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030000 [exp] 842 / 0 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028800 [exp] 834 / 0 AT4G21410 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 832 / 0 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029000 [exp] 824 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G025425 [exp] 659 / 0 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 657 / 0 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G029300 [exp] 652 / 0 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 651 / 0 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 649 / 0 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018382 [exp] 732 / 0 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 717 / 0 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 650 / 0 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10026629 [exp] 632 / 0 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 630 / 0 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10015091 [exp] 481 / 7e-154 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 452 / 5e-151 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 433 / 6e-144 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10027146 [exp] 419 / 4e-138 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10015094 [exp] 410 / 1e-134 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G026350.1 pacid=42794689 polypeptide=Potri.004G026350.1.p locus=Potri.004G026350 ID=Potri.004G026350.1.v4.1 annot-version=v4.1 ATGTTGTTTATATTTTCTTGCATCCTTCTGCACCTAGCTTCTCTAACCATAGCTCAAACGCAATTCTGTTCAAATGATGTAGGTAACTACACCACCAACA GCAATTTCCGAAGAAACCTCAACAGTGTCCTGTCTTCCCTGGATTCAAATACTCAAATTGACTACGGATTTTACAATCTATCGGTTGGCCAACCTGGTCC TGACCAAGCAAATGTAATTGCACTTTGCAGAGGAGATAATATTGGAATAGACGAATGCCAGAATTGTATTGGAAATTCTTCGGGTAATATCTTACAGTTC TGTCCAAACCAGAAAGAGGCATTTGGAATTGCTGATACTTGTATTCTACGATACTCCAACAAATCCATATTTGGTGTCATGGAAGACAATCCAGTATCCA TTCTTGTGAACACGGTCAATGCTACAGATGTGAATCAGTTCAATCAGGCTCTTCAAACGTTAATGAGTAGACTTCGAAGCACAGCTGCTTCAGGGAACTC TCTCCGAAAGTTTGCGACAGGAAATGAAACTGCCGGGTTTGACACCATTTTTGGGCTTGTTCAATGCACACCTGATCTATCTGAGCCGCAGTGTGATGAT TGCATCGCTGGGGCTATTCGGGTGATTGCAACATGTTGTGATGGAAGACAAGGAGCGAGAATCACAAGTCCAAGCTGCAATCTCAGGTATGAAGTCTACC GTTTCTTCGGAGTTACACCGGCCACACCACAGCTTCCAGCTTCGCCATCGCCACAAGCACCATCAGTTCCTCCTCCTCCACCACCAGCAGAAGGCAAGAA GAGGAACAATGCACGAACTATCATTATCATAGTTGTTTCGACTGTTAGCGTTGTGATACTTATGATCAGTTGCATCTGCCTCTATTTAAGAATCCGGAAG CCGGAAGAAAACGTTGAAACTGTGGAAGAAATGATAACAGCAGAATCCTTGCAATTCGACTTCAGTACTATTAGAGCTGCAACAGATAACTTTTCTGAGG AAAATAAGCTTGGACAAGGTGGATTTGGTTCTGTTTACAAGGGTACACTTTCTAATGGACAAGAGGTAGCAGTCAAAAGACTTTCCAAGGATTCTGGACA AGGAGATTTAGAATTTAAAAATGAAGTCCTGTTGGTTGCCAAGCTACAACACCGGAATTTAGTTAGACTTCAAGGATTTTGCTTGCAAGGAATCGAAAGG CTTCTTATCTACGAGTTTGTGCCTAATGCCAGCCTTGATCACTTCATATTCAATCAAGCGAGGCGAGCACAGCTGGACTGGGAAAGGCGTTACAAGATCA TTGGAGGCATCGCTCGTGGACTTCTTTACCTTCATGAGGACTCTCGCCTTCGAATCATTCATCGCGACCTCAAAGCTAGCAACATTTTATTGGATGCAGA CATGAATCCTAAAATTTCCGATTTCGGGATGGCAAGATTGTTCGTGATGGATGAAACTCAAGGCAATACAAGTAGAATCGTGGGGACATATGGCTACATG GCTCCAGAGTATGCGATGCATGGACAATTCTCAGTGAAATCAGACGTGTTTAGTTTCGGCGTGCTAATCTTGGAGATTGTGAGTGGTCAGAAAAACAACT GTTTTCGTAATGGTGAAACTGTAGAGGATTTATTGAGCTATGCATGGAGAAATTGGAGGGAAGGCACAGGTTTGAATGTTATAGACCCTGCTTTGAGCAC TGGTTCAAGAACTGAAATGATGAGATGTATCCATATTGGTTTACTCTGTGTTCAAGAAAACATAGCTGATAGACCAACCATGGCTTCGATTGTTCTAATG CTAAGCAGCTATTCTCTTACTCTGCCAGTACCTTCTCAACCAGCATTTTTTATGAACAGCAGCACATATCAATCAGACATATCATCGTCAATGGACTACA ATTCAAGGGTGACTAATTCCTCAGAGGCCAAAACTGAAGCTCTCCCATTGTCAGCAAATGAGGCATCAATTACTGAGTTATACCCTCGTTAA
AA sequence Show only first row Show all	>Potri.004G026350.1 pacid=42794689 polypeptide=Potri.004G026350.1.p locus=Potri.004G026350 ID=Potri.004G026350.1.v4.1 annot-version=v4.1 MLFIFSCILLHLASLTIAQTQFCSNDVGNYTTNSNFRRNLNSVLSSLDSNTQIDYGFYNLSVGQPGPDQANVIALCRGDNIGIDECQNCIGNSSGNILQF CPNQKEAFGIADTCILRYSNKSIFGVMEDNPVSILVNTVNATDVNQFNQALQTLMSRLRSTAASGNSLRKFATGNETAGFDTIFGLVQCTPDLSEPQCDD CIAGAIRVIATCCDGRQGARITSPSCNLRYEVYRFFGVTPATPQLPASPSPQAPSVPPPPPPAEGKKRNNARTIIIIVVSTVSVVILMISCICLYLRIRK PEENVETVEEMITAESLQFDFSTIRAATDNFSEENKLGQGGFGSVYKGTLSNGQEVAVKRLSKDSGQGDLEFKNEVLLVAKLQHRNLVRLQGFCLQGIER LLIYEFVPNASLDHFIFNQARRAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDADMNPKISDFGMARLFVMDETQGNTSRIVGTYGYM APEYAMHGQFSVKSDVFSFGVLILEIVSGQKNNCFRNGETVEDLLSYAWRNWREGTGLNVIDPALSTGSRTEMMRCIHIGLLCVQENIADRPTMASIVLM LSSYSLTLPVPSQPAFFMNSSTYQSDISSSMDYNSRVTNSSEAKTEALPLSANEASITELYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026350 [exp]	0	1
AT2G40410			Staphylococcal nuclease homolo...		Potri.010G182500 [exp]	1.00	0.7701
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.008G123700 [exp]	6.92	0.7175
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	7.54	0.7503
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	10.19	0.7620
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	10.67	0.7421
AT5G23350			GRAM domain-containing protein...		Potri.004G068200 [exp]	14.83	0.7186
					Potri.011G125251 [exp]	14.96	0.7485
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024200 [exp]	15.19	0.7286
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.015G050500 [exp]	25.80	0.6839
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	27.22	0.6705

Compare expression of checked genes

Potri.004G026350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.