Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61620 461 / 3e-165 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040000 [exp] 529 / 0 AT1G61620 462 / 2e-165 phosphoinositide binding (.1) Potri.001G082200 [exp] 41 / 0.0006 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018409 [exp] 461 / 6e-165 AT1G61620 459 / 3e-164 phosphoinositide binding (.1) Lus10002584 [exp] 460 / 8e-165 AT1G61620 459 / 2e-164 phosphoinositide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04641 [poplar] [flax] Rtf2 Rtf2 RING-finger CL0229 [poplar] [flax] RING PF15906 [poplar] [flax] zf-NOSIP Zinc-finger of nitric oxide synthase-interacting protein
Representative CDS sequence Show only first row Show all	>Potri.004G026800.1 pacid=42794007 polypeptide=Potri.004G026800.1.p locus=Potri.004G026800 ID=Potri.004G026800.1.v4.1 annot-version=v4.1 ATGCCTCAAAGACACTCAAAAAACAACAACGATTTAGCTTTTTTCACGTACGATGAGAAGAGAAAGCTAGGTTATGGGACACAAAAGGAGAGACTTGGAA AGGATTCGATTAAGCCATTCGATGCTTGCTGTCTCTGCTTGAAACCATTTATTGATCCAATGTCTTGTCAGAAAGGTCATGTCTTTTGTAAAGAATGCAT ATTAGAATGCCTCTTAGCCCAAAAGAAAGACATTCAAAGGAAGCTAGCTGCCCATGAATTACAGAAGAAGCAGGAAAAGGATGAGGAGAAAGAGAAGTTC ATGTTGCAGAAAGCAAGGGAGCTTGATGCATTTGATCAGCAAAATCATGGTGCAGTTCCACAGTACAGCGATAGAAACCACAGCCAAGACAAGCCAGGGT TCCACGGGGCAAACAGTGTGAAGGTCACTTCGTATGAAGAGGAAGCTCTCCGGACAATGAAAGCATTTTGGCTACCCTCAGCTACACCAGATGCTCCTGT TAAAGTGGACGCTCCTTCCACAAGTACTGTCTGCCCAGAAGGCAAGGAAAAGCTCAAGCTGAAGAGCCTGTTCCCTGTTTACTTTACAGAAGACACCAGT GAAAAGAAATCATCCAGTTCTCTTGATAAGACCTACATTTGTCCTAGCTGCAAGGTTACTCTCACCAACACACTATCACTAGTGGCACTTAGTTCCTGTG GTCATGTCTTCTGCAAGAAGTGCTCTGACAAATTTATGGCTGTCGATAAGGTTTGTCTGGTTTGCACTAAGGGATGTAAAGAGCGCAATTTGGTGAACTT GGGAAAAGGTGGAACAGGCTTTGCTGGCCATGGGGATCATCTCATGGCAACAGAGTTCAAGCATTTGGGTAGTGGTTCAGGATTGGGACTTGTGAGACCA GCCGCAAAGTCTTAA
AA sequence Show only first row Show all	>Potri.004G026800.1 pacid=42794007 polypeptide=Potri.004G026800.1.p locus=Potri.004G026800 ID=Potri.004G026800.1.v4.1 annot-version=v4.1 MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACCLCLKPFIDPMSCQKGHVFCKECILECLLAQKKDIQRKLAAHELQKKQEKDEEKEKF MLQKARELDAFDQQNHGAVPQYSDRNHSQDKPGFHGANSVKVTSYEEEALRTMKAFWLPSATPDAPVKVDAPSTSTVCPEGKEKLKLKSLFPVYFTEDTS EKKSSSSLDKTYICPSCKVTLTNTLSLVALSSCGHVFCKKCSDKFMAVDKVCLVCTKGCKERNLVNLGKGGTGFAGHGDHLMATEFKHLGSGSGLGLVRP AAKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61620			phosphoinositide binding (.1)		Potri.004G026800 [exp]	0	1
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	4.35	0.8867
AT4G27680			P-loop containing nucleoside t...		Potri.015G007700 [exp]	6.00	0.8520
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	6.00	0.8787
AT5G67630			P-loop containing nucleoside t...		Potri.006G118900 [exp]	6.70	0.8539
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	9.48	0.8690
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Potri.014G135590 [exp]	10.72	0.8225
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	12.12	0.8514
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.006G003100 [exp]	13.85	0.8145
AT3G26590			MATE efflux family protein (.1...		Potri.019G063500 [exp]	15.36	0.8611
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	15.81	0.8458

Compare expression of checked genes

Potri.004G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.