Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11300 64 / 9e-14 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 59 / 4e-12 S-locus lectin protein kinase family protein (.1.2) AT1G11350 59 / 4e-12 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11410 54 / 3e-10 S-locus lectin protein kinase family protein (.1) AT4G23180 52 / 1e-09 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G65790 51 / 2e-09 ARK1 receptor kinase 1 (.1) AT4G21390 51 / 3e-09 B120 S-locus lectin protein kinase family protein (.1) AT4G23150 49 / 1e-08 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G00970 49 / 2e-08 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23300 49 / 2e-08 CRK22 cysteine-rich RLK (RECEPTOR-like protein kinase) 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027300 [exp] 131 / 2e-37 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 81 / 1e-19 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038512 [exp] 77 / 2e-19 AT1G11350 215 / 1e-65 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) Potri.011G038166 [exp] 76 / 3e-19 AT1G11350 179 / 4e-53 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) Potri.011G039200 [exp] 79 / 6e-19 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 77 / 2e-18 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 77 / 2e-18 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038000 [exp] 74 / 3e-17 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 73 / 5e-17 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007610 [exp] 61 / 9e-13 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 57 / 2e-11 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10018405 [exp] 57 / 3e-11 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10025774 [exp] 57 / 4e-11 AT3G16030 390 / 2e-123 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10038411 [exp] 54 / 3e-10 AT1G11330 308 / 1e-98 S-locus lectin protein kinase family protein (.1.2) Lus10007603 [exp] 53 / 8e-10 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10035878 [exp] 52 / 1e-09 AT3G16080 166 / 1e-53 Zinc-binding ribosomal protein family protein (.1) Lus10025784 [exp] 52 / 2e-09 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10003156 [exp] 52 / 2e-09 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10023391 [exp] 51 / 3e-09 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G027533.1 pacid=42794012 polypeptide=Potri.004G027533.1.p locus=Potri.004G027533 ID=Potri.004G027533.1.v4.1 annot-version=v4.1 ATGCATGTAGGTCTTTTGTGTGTTCAAGAGTTTGCAAAAGATAGGCCAGCTGTGCCTACAATCACTTCAATGCTTCACAGCGAAATTGTGGATCTTCCTG CTCCCAAGAAACCTGCACTTGGTTTCGAAATGGACTCCCTTCAATGGAGCCAAACGATATGTTCTAATGACATATCATTTACTGTTATTGGAGGGCGATA G
AA sequence Show only first row Show all	>Potri.004G027533.1 pacid=42794012 polypeptide=Potri.004G027533.1.p locus=Potri.004G027533 ID=Potri.004G027533.1.v4.1 annot-version=v4.1 MHVGLLCVQEFAKDRPAVPTITSMLHSEIVDLPAPKKPALGFEMDSLQWSQTICSNDISFTVIGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	0	1
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	3.16	0.9202
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	3.46	0.9072
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	3.46	0.9241
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.009G108600 [exp]	3.74	0.9174
					Potri.006G028101 [exp]	4.00	0.9148
AT4G19160			unknown protein		Potri.001G193400 [exp]	4.47	0.9104
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.018G051800 [exp]	5.38	0.9259
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G131100 [exp]	6.16	0.9250
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	15.49	0.8912
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	16.00	0.9026	AAT1.2,PtrCAT12

Compare expression of checked genes

Potri.004G027533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.