Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 196 / 1e-57 S-locus lectin protein kinase family protein (.1.2) AT1G11300 180 / 2e-51 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 169 / 6e-48 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61390 153 / 3e-42 S-locus lectin protein kinase family protein (.1.2) AT1G61440 152 / 8e-42 S-locus lectin protein kinase family protein (.1) AT1G61380 148 / 1e-40 SD1-29 S-domain-1 29 (.1) AT1G61420 147 / 4e-40 S-locus lectin protein kinase family protein (.1) AT1G61610 146 / 6e-40 S-locus lectin protein kinase family protein (.1) AT1G61500 146 / 9e-40 S-locus lectin protein kinase family protein (.1) AT1G61480 144 / 4e-39 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027300 [exp] 411 / 3e-139 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 267 / 8e-84 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 263 / 1e-82 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 255 / 1e-79 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038300 [exp] 244 / 3e-79 AT1G11330 330 / 1e-105 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 253 / 6e-79 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 253 / 9e-79 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037900 [exp] 248 / 5e-78 AT1G11330 630 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037800 [exp] 246 / 4e-76 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 147 / 7e-40 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007602 [exp] 138 / 5e-37 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10007600 [exp] 136 / 4e-36 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018405 [exp] 134 / 1e-35 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 134 / 1e-35 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 129 / 1e-33 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10014808 [exp] 127 / 3e-33 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 126 / 8e-33 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 122 / 2e-31 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 122 / 2e-31 AT4G21380 810 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.004G027666.1 pacid=42795617 polypeptide=Potri.004G027666.1.p locus=Potri.004G027666 ID=Potri.004G027666.1.v4.1 annot-version=v4.1 ATGCAAATGCAGTATTCGATTCTATGCCCACAAAAACATCAAATGTCATATGGGAGACTCGTAGTTTTGAATGGTCAGCAAGAGATTCTTTGGTCATCAA ATGTTTCAGCTGGAGTTAAAGACTCAATTGCACAGCTTACGGATGATGGAAACCTTGTCTTGCTCGGTAAAAACAATGGAAATGTTATATGGGAGAGTTT TCAGCGGCCTTGTAATACACTCTTGCCAAATATGAGACTTGGTGCTAATGCTAGAACTGGCGAGTCGACAGTACTAACATCATGTATAAGCCCTTCTAAT CCATCCGTCGGACGCTTCTCTGTTTCCATGGATCCCTTAAGAATTCCCGAAGTATTTGTGTGGAACTATAAGAGTCCATTTTGGCGGAGTGGTCCATGGA ATGGTCAGATCTTTATTGGGATTCCTGAGATGAACTCTGTTTATCTGGATGGATTTAATCTTGCAAAAACTGCAGATGGAGCCGTGTCTCTAAGTTTCAC TTATGTAAATCAGCCTAATAGCAATTTTGTTTTGCGTTCCGATGGAAAATTGATAGAAAGAGCCTGGAAAGTGGGAACCAGGATTGGAATAAATTATGGA AAGTGTGGAGCATTTGGAAGCTGTAATGCTGTGAATTCACCAATCTGCAGCTGTTTGAGAGGGTTTGTTCCAAAAAATCCAGATGAATGGAATAAAGGAA ACTGGACAAGTGGTTGCATTAGGAGGACACCACTAGAATGCACAGAAACACAAAATATATGA
AA sequence Show only first row Show all	>Potri.004G027666.1 pacid=42795617 polypeptide=Potri.004G027666.1.p locus=Potri.004G027666 ID=Potri.004G027666.1.v4.1 annot-version=v4.1 MQMQYSILCPQKHQMSYGRLVVLNGQQEILWSSNVSAGVKDSIAQLTDDGNLVLLGKNNGNVIWESFQRPCNTLLPNMRLGANARTGESTVLTSCISPSN PSVGRFSVSMDPLRIPEVFVWNYKSPFWRSGPWNGQIFIGIPEMNSVYLDGFNLAKTADGAVSLSFTYVNQPNSNFVLRSDGKLIERAWKVGTRIGINYG KCGAFGSCNAVNSPICSCLRGFVPKNPDEWNKGNWTSGCIRRTPLECTETQNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Potri.004G027533 [exp]	3.46	0.9241
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	4.24	0.8612	GT2.3
AT4G19160			unknown protein		Potri.001G193400 [exp]	8.06	0.8858
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	11.83	0.8675
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	13.41	0.8486
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108832 [exp]	14.69	0.8636
					Potri.005G201350 [exp]	14.83	0.8267
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	16.43	0.8427	Pt-DET1.1
AT2G03710	MADS	AGL3, SEP4	SEPALLATA 4, AGAMOUS-like 3, K...		Potri.001G058200 [exp]	19.28	0.7871
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014450 [exp]	20.78	0.8085

Compare expression of checked genes

Potri.004G027666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.