Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 941 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 901 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 721 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 706 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11340 670 / 0 S-locus lectin protein kinase family protein (.1) AT1G11350 666 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21380 641 / 0 ARK3 receptor kinase 3 (.1) AT1G11410 638 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 636 / 0 S-locus lectin protein kinase family protein (.1) AT1G61480 634 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027900 [exp] 1559 / 0 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 1395 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 1395 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 747 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 742 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 737 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 729 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 728 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039400 [exp] 718 / 0 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 1062 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 1038 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10006742 [exp] 863 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 763 / 0 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 661 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 630 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 629 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 627 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 626 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 625 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G027800.1 pacid=42794675 polypeptide=Potri.004G027800.1.p locus=Potri.004G027800 ID=Potri.004G027800.1.v4.1 annot-version=v4.1 ATGATCAGCAAGAGCATAAACCCAGTTCTTGTTTTTCTCTTGTCGGTCTCTTATTCCTTGTTGTTCCTAGCTCCCTTTTGCCATGCTGCGAATAATACAC TCACAATAGGCCAATCACTAAAAGATGGTGAGTCCTTGATATCAGTTGATGAGAACTTTGAACTGGGATTCTTTAGCCCTGGAAACTCTAGTTTAAGATA TTGTGGTATAAGGTATTACAAGATTCGGGATCAGGCTGCCATCTGGGTGGCTAATAGAGAAAAACCAATCTCCGGTAGCAATGGAGTCTTGAGGATAGGT GAAGATGGGAATTTGTTGGTTACAGATGGAAATGGAAGTCCAGTTTGGTCAAGTAATGCTTCAGTAGTGTCTAATAACACAGCAGCGATGCTTGATACAA CAGGTAATCTAATTCTCTCGAGCAATGATAGTATTGGTGAGACAGATAAAGCCTATTGGCAAAGCTTCAATAATCCAACCGACACCTATTTGCCACACAT GAAAGTTCTTATAAGTTCTGCAGAGATTCATGCCTTCACTTCATGGAAATCTGCAAATGATCCTTCACCAGGAAACTTCACCATGGGAGTTGATCCTCGC GGAGCACCACAGATAGTGATTTGGGAGCGATCGAGGAGAAGGTGGAGAAGTGGGCACTGGAATGGACTAATATTCTCAGGTGTTCCATATATGACAGCTT TAACCACTTACCGATATGGATTTAAGGTCACTCGTGAAAGCGATGGAAATTTTTATTTAACATACAATCCATCAGATAGTTCTGAATTGATGAGGTTTCA GATAACATGGAATGGATTTGAAGAGCAGAAAAGGTGGAATGAAAGTGCAAAGACGTGGCAAGTAATGCAATCACAGCCTTCTGAAGAATGTGAGAATTAC AATTATTGTGGCAATTTTGGAGTCTGTACTTCATCAGGATCTCCAAAATGCAGATGTATGGAAGGGTTTGAGCCAAGGCATCCAGATCAGTGGAGACTAG GAAATTGGTCAGGCGGATGTGGAAGAAGGTCTCCTTTACAGTGCCAGAGGAACACTAGTAGTGGTGGAGAGGATGGGTTCAAAACATTAAGGGGCTCGAA GTTGCCTGATTTTGCAGATGTGGAGTCGATCTCCTTGGATGCTTGCAGAGAAATGTGTCTAAATAACTGTTCATGTAAGGCATATGCGCACGTCAGTCAG ATTCAATGCATGATATGGAATGGGGACTTGATTGATGTCCAGCATTTTGTCGAAGGTGGGAACACTCTGTATGTACGTCTCGCAGATTCTGAATTAGGTC GCAACAGGATGCCTACGTATGTGATAATACTAATAGTTTTGGCTGGACTGGCCTTCCTAGCTATATCTATATGGCTTCTGTGGATGCTCAAAAAAAGACT CAAAGTTTTGCCAGCGGCTACCTCAGCTTGCACGTCGTCAAAATGTGAATTGCCAGTTTATGATCTGAGTAAAAGTAAAGAGTACTCAACCGATGCTTCT GGATCTGCTGACCTTCTTAAAGAAGGGAGCCAAGTAAATGGTTCAGATTTGCCAATGTTCAATTTCAACTGTTTAGCAGCTGCAACAGACAATTTTTCTG AAGAAAACAAGCTTGGGCAGGGAGGATTTGGCCTCGTCTACAAGGGAACGCTTCCTGGAGGAGAGGAAATAGCTGTAAAGAGGCTTTCAAAGATCTCTGG CCAAGGTTTACAGGAGTTCAAGAATGAAATTATTCTGATTGCCAAATTGCAGCACAGGAATCTTGTTCGATTGTTAGGATGCAGCATTCAGGGTGATGAG AAGATGCTCATTTATGAATATATGCCAAATAAAAGCCTGGATTACTTCCTTTTTGATCCCGAGAAGCAAGCTCTATTAGACTGGAGTAAACGTTTCGCAA TTATTGAGGGGATTGCCAGAGGTCTTCTTTATCTCCATAGGGATTCAAGACTAAGAATCATTCATCGGGACCTAAAGGCTAGTAACATTTTGTTGGATGA AGAAATGAACCCAAAGATTTCCGACTTCGGCATGGCCAGAATATTTGGGGGAAACCAAAGTGAAATAAACACAAACCGAGTTGTAGGAACATATGGTTAT ATGGCACCTGAATATGCAATGGAAGGCCTATTTTCAGTGAAGTCTGATGTTTATAGCTTTGGAGTACTACTCCTAGAGATTGTGAGTGGCCGAAGGAATA CTAGCTTCCGTCAAACAGAACGCATGATCCTCATTGCTTATGCATGGGATCTTTGGAATGAAGGTAAAGCAATGGACATAGTTGATCTTTCCATCCGAGA TTCATGTGATGAAAAGGAAGTTCTGAGATGCATACAAATCGGCATGTTGTGTGTGCAAGATTCTGCACTTCATAGACCAAACATGGCATCAGTTGTGGTA ATGCTGGAGAGCAGCACAACAAGCATTCCATTGCCTAGGCAACCCACTTTCACTTCTGTCAGAGCCTCTATAGACCCTGAAATCTCTCTGGAAGTGCAAG AAGTAGCATCGTCAAGCGACTTGACAGTGAAAGTGGTAGCAGGCAGATGA
AA sequence Show only first row Show all	>Potri.004G027800.1 pacid=42794675 polypeptide=Potri.004G027800.1.p locus=Potri.004G027800 ID=Potri.004G027800.1.v4.1 annot-version=v4.1 MISKSINPVLVFLLSVSYSLLFLAPFCHAANNTLTIGQSLKDGESLISVDENFELGFFSPGNSSLRYCGIRYYKIRDQAAIWVANREKPISGSNGVLRIG EDGNLLVTDGNGSPVWSSNASVVSNNTAAMLDTTGNLILSSNDSIGETDKAYWQSFNNPTDTYLPHMKVLISSAEIHAFTSWKSANDPSPGNFTMGVDPR GAPQIVIWERSRRRWRSGHWNGLIFSGVPYMTALTTYRYGFKVTRESDGNFYLTYNPSDSSELMRFQITWNGFEEQKRWNESAKTWQVMQSQPSEECENY NYCGNFGVCTSSGSPKCRCMEGFEPRHPDQWRLGNWSGGCGRRSPLQCQRNTSSGGEDGFKTLRGSKLPDFADVESISLDACREMCLNNCSCKAYAHVSQ IQCMIWNGDLIDVQHFVEGGNTLYVRLADSELGRNRMPTYVIILIVLAGLAFLAISIWLLWMLKKRLKVLPAATSACTSSKCELPVYDLSKSKEYSTDAS GSADLLKEGSQVNGSDLPMFNFNCLAAATDNFSEENKLGQGGFGLVYKGTLPGGEEIAVKRLSKISGQGLQEFKNEIILIAKLQHRNLVRLLGCSIQGDE KMLIYEYMPNKSLDYFLFDPEKQALLDWSKRFAIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEEMNPKISDFGMARIFGGNQSEINTNRVVGTYGY MAPEYAMEGLFSVKSDVYSFGVLLLEIVSGRRNTSFRQTERMILIAYAWDLWNEGKAMDIVDLSIRDSCDEKEVLRCIQIGMLCVQDSALHRPNMASVVV MLESSTTSIPLPRQPTFTSVRASIDPEISLEVQEVASSSDLTVKVVAGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027800 [exp]	0	1
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	4.00	0.8311
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	4.24	0.8366
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	7.87	0.8395
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	9.21	0.8228
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	9.48	0.8215
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	9.89	0.8007
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Potri.001G189500 [exp]	10.67	0.8395
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	12.40	0.8186
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	20.24	0.8065	LON.1
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.014G035700 [exp]	26.22	0.8004	ADR1.2

Compare expression of checked genes

Potri.004G027800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.