Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 914 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 888 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 707 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 704 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 672 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 659 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 644 / 0 ARK3 receptor kinase 3 (.1) AT1G11410 630 / 0 S-locus lectin protein kinase family protein (.1) AT1G61480 627 / 0 S-locus lectin protein kinase family protein (.1) AT1G61500 625 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027800 [exp] 1536 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 1377 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 1367 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 741 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 733 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 726 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 722 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039400 [exp] 714 / 0 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027400 [exp] 713 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018408 [exp] 1038 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 1023 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10006742 [exp] 853 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 756 / 0 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 655 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 635 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 630 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 627 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 627 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 624 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G027900.1 pacid=42793963 polypeptide=Potri.004G027900.1.p locus=Potri.004G027900 ID=Potri.004G027900.1.v4.1 annot-version=v4.1 ATGGTCAGCATGAGCATGATCCCAGTTCTTGTTTTTCTCTTGTCGGTCTCTTATTCCCTGTTGTTTCTAGCTCCCTTTTGCCATGCTGCCACTAATACAC TCACAATAGGCCAATCACTAAAAGATGGTGAGACCTTGATATCAGTTGATGAGAACTTTGAACTGGGATTCTTTAGCCCTGGAAATTCTAGTTTAAGATA TGTTGGTATAAGGTATTACAAGATTCAGGATCAGGCTGTCATCTGGGTTGCTAATAGAGAAAAACCAATCTCCGGTAGCAATGGAGTCTTGAGGATAGGT GAAGATGGGAATTTGTTGGTTACAGATGGAAATGGAAGTCCAGTTTGGTCGAGCAATGCTTCAGTAGTTTCTAGTAACACAGCAGCGATGCTTGATGTTA CAGGTAATCTTATTCTCTCGAGCAATGATAGTATTGGTGAGACAGATAAAGCCTATTGGCAAAGCTTCAATAATCCAACCGATACCTATTTGCCACACAT GAAAGTTCTTGTAAGTACTGCAGAGATTCATGTCTTCACTTCATGGAAATCTGCAAATGATCCTTCACCAGGAAATTTCACCATGGGAGTTGATCCTCGC GGAACACCGCAGATAGTTGTTTGGGAGGGATCGAGGAGAAGGTGGAGAAGTGGGCACTGGAATGGAATAATATTCTCAGGTGTTCCGTATATGAAAGCTT TTACCACTTACCAATATGGATTTAAGTTTTCTCCTGAAAGCGATGGAAACTTTTATGTTACATACAATCCATCAGATAATTCTGAATTCTTGAGGTTTCA GATAACTTGGAATGGATTTGAAGAGACGAAAAAGTGGAATGAAAGTGCAAAGACGTGGCAAGTAATTCAAGCACAACCTTCTGAAGAGTGTGAGAATTAC AATTACTGTGGCAATTTTGGAGTCTGTACTCCATCAGGATCTCCCAAATGCAGATGCATGGAAGGGTTTGAGCCAAGGCATCCAGATCAGTGGAGACTAG GAAATTGGTCAGGCGGATGTGGAAGAAGGTCTCCTTTACAGTGCCAGAGGAACACTAGTAGTGGTGGAGAAGATGGGTTCAAAACAGTAAGGTGCATGAA GTTGCCTGATTTTGCAGATGTGAAGTCGATCTCCTTGGATGCTTGCAGAGAAATGTGTCTAAATAACTGTTCATGTAAGGCATATGCGCACGTCAGTGAG ATTCAATGCATGATATGGAATGGAGACTTGATTGATGTTCAGCATTCTGTCGAAGGTGGGGACACCCTGTACTTGCGTCTCGCAGATTCTGAATTAGATC GCAGCAGGATGTCTATGTATGTGATAATACTAATAGTTTTGGCTGGACTGGCCTTCCTAGCCATATCTATATGGCTTCTGTGGATGCTCAAAAAAAGACT CAAAGTTTTGCCAGCGGCTACCTCAGCTTGCACGTCGTCAAAATGTGAATTGCCAGTTTATGATCTGAGTAAAAGTAAAGAGTACTCAACCGATGCTTCT GGATCTGCTGACCTTCTTAAAGAAGGGAGCCAAGTAAATGGTTCAGATTTGCCAATGTTCAATTTCAACTGTTTAGCAGCTGCAACAGACAATTTTTCTG AAGAAAACAAGCTTGGACAGGGAGGATTTGGCCTCGTCTACAAGGGAAAGCTTCCTGGAGGAGAGGAAATAGCTGTAAAGAGGCTTTCAAATATCTCTGG CCAAGGCTTACTGGAATTCAAGAATGAAATTATTCTGATTGCCAAATTGCAGCACAGAAATCTTGTTCGATTATTAGGATGCAGCATTCAGGGTGATGAG AAGATGCTCATTTATGAATATATGCCAAATAAAAGCCTGGATTACTTCCTTTTTGATCCCGAGAAGCAAGCTCTATTAGACTGGAGTAAACGTTTCGCAA TTATTGAGGGGATTGCCAGAGGTCTTCTTTATCTCCATAGGGATTCAAGACTAAGAATCATTCATCGGGACCTAAAGGCTAGTAACATTTTGTTGGATGA AGAAATGAACCCAAAGATTTCCGACTTCGGCATGGCCAGAATATTTGGGGGAAACCAAAGTGAAATAAACACAAACCGAGTTGTAGGAACATATGGTTAT ATGGCACCTGAATATGCAATGGAAGGCCTATTTTCAGTGAAGTCTGATGTTTATAGCTTTGGAGTACTACTCCTAGAGATTGTGAGTGGCCGAAGGAATA CTAGCTTCCGTCAAACAGAACGCATGATCCTCATTGCTTATGCATGGGATCTTTGGAATGAAGGTAAGACAATGGAGATAGTTGATCCTTCCATCCGAGA TTCATGTGATGAAAACGAAGTGCTGAGATGCATACAAATCGGCATGTTGTGTGTGCAAGATTCTGCACTTCATAGACCAAGCATGGCATCAGTTGTGGTA ATGCTGGAGAGCTGCACAACAAACATTCCATTGCCTAGACAACCAAATTTCACTTCTGTCAGGGCCTCTATAGACCCTGAAATTTCTCTGGAAGTGCATG AAGTAGCATTGTCAAGCTAA
AA sequence Show only first row Show all	>Potri.004G027900.1 pacid=42793963 polypeptide=Potri.004G027900.1.p locus=Potri.004G027900 ID=Potri.004G027900.1.v4.1 annot-version=v4.1 MVSMSMIPVLVFLLSVSYSLLFLAPFCHAATNTLTIGQSLKDGETLISVDENFELGFFSPGNSSLRYVGIRYYKIQDQAVIWVANREKPISGSNGVLRIG EDGNLLVTDGNGSPVWSSNASVVSSNTAAMLDVTGNLILSSNDSIGETDKAYWQSFNNPTDTYLPHMKVLVSTAEIHVFTSWKSANDPSPGNFTMGVDPR GTPQIVVWEGSRRRWRSGHWNGIIFSGVPYMKAFTTYQYGFKFSPESDGNFYVTYNPSDNSEFLRFQITWNGFEETKKWNESAKTWQVIQAQPSEECENY NYCGNFGVCTPSGSPKCRCMEGFEPRHPDQWRLGNWSGGCGRRSPLQCQRNTSSGGEDGFKTVRCMKLPDFADVKSISLDACREMCLNNCSCKAYAHVSE IQCMIWNGDLIDVQHSVEGGDTLYLRLADSELDRSRMSMYVIILIVLAGLAFLAISIWLLWMLKKRLKVLPAATSACTSSKCELPVYDLSKSKEYSTDAS GSADLLKEGSQVNGSDLPMFNFNCLAAATDNFSEENKLGQGGFGLVYKGKLPGGEEIAVKRLSNISGQGLLEFKNEIILIAKLQHRNLVRLLGCSIQGDE KMLIYEYMPNKSLDYFLFDPEKQALLDWSKRFAIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEEMNPKISDFGMARIFGGNQSEINTNRVVGTYGY MAPEYAMEGLFSVKSDVYSFGVLLLEIVSGRRNTSFRQTERMILIAYAWDLWNEGKTMEIVDPSIRDSCDENEVLRCIQIGMLCVQDSALHRPSMASVVV MLESCTTNIPLPRQPNFTSVRASIDPEISLEVHEVALSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027900 [exp]	0	1
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	1.41	0.8701	Pt-ALA5.2
					Potri.011G033200 [exp]	5.47	0.8067
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	6.32	0.8508
					Potri.004G012000 [exp]	6.78	0.8705
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114400 [exp]	13.49	0.7648
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.009G114001 [exp]	13.74	0.8468
AT1G77460			Armadillo/beta-catenin-like re...		Potri.002G081101 [exp]	15.09	0.8490
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.008G082301 [exp]	16.24	0.8463
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.019G118400 [exp]	18.76	0.8587
AT3G52360			unknown protein		Potri.016G066200 [exp]	21.63	0.8266

Compare expression of checked genes

Potri.004G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.