Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 1020 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 972 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 946 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 715 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 690 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 661 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 649 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 647 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 643 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 622 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037100 [exp] 1454 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.001G414077 [exp] 856 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 837 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 830 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 819 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 818 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 818 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 818 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 810 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018405 [exp] 1133 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 1077 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 801 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 791 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 780 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 772 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 761 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 761 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 756 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 744 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403) CL0168 [poplar] [flax] PF12398 [poplar] [flax] DUF3660 Receptor serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.004G028000.1 pacid=42793837 polypeptide=Potri.004G028000.1.p locus=Potri.004G028000 ID=Potri.004G028000.1.v4.1 annot-version=v4.1 ATGAGGCACCATTATGGCACAACCACTCTGTTCTTCTTCATCACTTTCCTTTCTCTCTTCTCCTCAAAATTTGCCTCATCTTTAGACACCTTAACAGCAA CACAATCTCTCATAAATGGCCAAACTCTCATCTCCACAAGCCAGGGCTTTGAGCTTGGATTCTTCACTCCTGGCAATTCAAGAAACTGGTATGTGGGGAT ATGGTACAAGAACATACCAAGAACTTATGTGTGGGTTGCTAACAGAGACAAACCTCTTTCAAACTCCTCTGGAACCTTCAAAATCTTCAATCAAAGCATT GCTCTATTTGATCTAGCTGGGAAAGTCGTATGGTCATCCAACCAAACCAATGCGAGAAACCCAGTTATGCAGTTGCTAGATTCAGGAAACCTTGTATTGA AAGAGCAAGTAAGTGAAAGTGGTCAGTTTTTGTGGCAAAGCTTTGACTATCCAACTGATACTTTATTACCTGACATGAAGTTAGGCTGGGATCTCAACAC GGGTCTAGACAGGTACTTGAGTTCATGGAAAAGCAGTGAGGATCCTGGTACAGGTGATTTCTCTTTCAAGCTAGAGTATCATGGATTCCCTGAAGTATTC TTGTGGAAAGATAATGAAATTGAGTATAGAAGTGGGCCATGGAATGGACAAAGATTTAGTGGTGTACCAGAGATGAAGCCTGTTGATTACCTGAGTTTCA ATTTTATCACTGAGCAAGATGAGGTATATTACTCGTTTCACATAGCAACCAAGAATTTATATTCAAGATTGACAGTTACTTCATCTGGGCTGCTCCAACG ATTTGCATGGATTCCAGAGACACAACAATGGAATAAATTTTGGTACGCACCAAAAGATCAGTGTGACAACTACAAAGAATGTGGTGCATATGGTATTTGT GACTCGAATGCATCACCAGTTTGCAAGTGCTTGAAGGGTTTTCAGCCTAAGAATCATCAGGCATGGGATTTGAGAGATGGGTCAGGTGGGTGTGTTAGGA AGACAAATCTGGAGTGCTTGAAAGATAAATTTCTGCACATGAAGAACATGAAATTGCCACAGAGCACAACATCATTTGTGGACAGGAGTATGAGCCTTAA GAATTGTGAATTGTTGTGCTCAAGGAATTGTTCTTGTACTGCTTACGCTAACTCAAATATCAGCAATGGAGGGTCTGGCTGTGTGATTTGGACCGGAGAG CTCTTTGATTTGAGACAATATCCAGAAGGTGGACAAGATCTTTATGTTAGATTGGCAGCTTCCGATATAGGTGATGGAGGGAGTGCAGACACTATAATTA TTTGCATTGCTGTTGGCATTGGCATTTTAATATTATCACTAACTGGCTTTTCCATATGGAAGAGGAAGAGATTGCTGAGTGTATGTAATGGAACACAGCA GAAAGGTCCTCAAGAGAGAAGCCAAGATTTATTGTTAAATGAGGTGGTTATAAATAAGAAAGACTACTCTGGTGAAAAAAGCACAGATGAACTAGAACTG CCACTGTTTGATTTTAGTACAATAGCAGCAGCTACCGGCAATTTCTGTGACGAAAATAAACTTGGAGAAGGTGGCTTTGGTTGTGTTCACAAGGGTAGGC TAGTAGAAGGCCAAGAAGTAGCAGTCAAGAGGCTGTCAAAGAAGTCTGGTCAGGGAACAGAAGAATTCAAGAATGAGGTCAGGTTAATTGCAAGGCTTCA ACACAGAAATCTTGTTCGACTGCTCGGTTGCTGCATTGAGATGGATGAGAAGATTCTTATTTATGAGTTCATGGAAAACAGAAGCCTGGATTCTGTTCTA TTCAATAAGGCAAAAAGCTCTCTACTAAATTGGCAGAGGCGCTTCAACATCATCTGTGGGACTGCTAGAGGACTTCTGTATTTACATCAGGATTCCAGAT TTAGAATTATCCACAGAGATCTCAAAGCAAGCAACATTCTGCTTGATGGGGAATGGACTCCAAAAATATCTGACTTTGGCATGGCTAGAATATTTGGTGG AGATCAAACACAAGCAAACACCAGGAGGATAGTAGGAACATATGGTTATATGTCTCCGGAATATGCAATGGATGGGCTATTCTCAGTGAAATCAGACGTT TTCAGCTTCGGAGTTTTAGTTTTGGAGATTGTATGTGGGGAAAAGAACAGGGGGTTTTATCACTCAAACAGTGAACTTAACCTTCTTGGGAATGTGTGGA GGCAGTGGAAAGATGGGAATGGATTGGAAGTGTTAGATATATCAGTTGGCAGTTCATATAGCCCTAGTGAAGTTTTGAGATGTATACAAGTAGGCCTTTT ATGTGTCCAAGAGCGAGCAGAAGATAGACCAACAATGGCTTCTGCGGTGTTGATGTTGAGCAGTGAAACTGCATCAATGCCCCAGCCTAAAACTCCTGGT TATTGCCTTGGAAGGAGTCCTTTTGAAACTGATTCCTCTTCAAGCAAACAAGATGAATCATTCACTGTAAACCAAGTTACAGTTACAGTGCTAGATGCTA GGTAA
AA sequence Show only first row Show all	>Potri.004G028000.1 pacid=42793837 polypeptide=Potri.004G028000.1.p locus=Potri.004G028000 ID=Potri.004G028000.1.v4.1 annot-version=v4.1 MRHHYGTTTLFFFITFLSLFSSKFASSLDTLTATQSLINGQTLISTSQGFELGFFTPGNSRNWYVGIWYKNIPRTYVWVANRDKPLSNSSGTFKIFNQSI ALFDLAGKVVWSSNQTNARNPVMQLLDSGNLVLKEQVSESGQFLWQSFDYPTDTLLPDMKLGWDLNTGLDRYLSSWKSSEDPGTGDFSFKLEYHGFPEVF LWKDNEIEYRSGPWNGQRFSGVPEMKPVDYLSFNFITEQDEVYYSFHIATKNLYSRLTVTSSGLLQRFAWIPETQQWNKFWYAPKDQCDNYKECGAYGIC DSNASPVCKCLKGFQPKNHQAWDLRDGSGGCVRKTNLECLKDKFLHMKNMKLPQSTTSFVDRSMSLKNCELLCSRNCSCTAYANSNISNGGSGCVIWTGE LFDLRQYPEGGQDLYVRLAASDIGDGGSADTIIICIAVGIGILILSLTGFSIWKRKRLLSVCNGTQQKGPQERSQDLLLNEVVINKKDYSGEKSTDELEL PLFDFSTIAAATGNFCDENKLGEGGFGCVHKGRLVEGQEVAVKRLSKKSGQGTEEFKNEVRLIARLQHRNLVRLLGCCIEMDEKILIYEFMENRSLDSVL FNKAKSSLLNWQRRFNIICGTARGLLYLHQDSRFRIIHRDLKASNILLDGEWTPKISDFGMARIFGGDQTQANTRRIVGTYGYMSPEYAMDGLFSVKSDV FSFGVLVLEIVCGEKNRGFYHSNSELNLLGNVWRQWKDGNGLEVLDISVGSSYSPSEVLRCIQVGLLCVQERAEDRPTMASAVLMLSSETASMPQPKTPG YCLGRSPFETDSSSSKQDESFTVNQVTVTVLDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.004G028000 [exp]	0	1	ARK3.1
AT2G21080			unknown protein		Potri.006G279200 [exp]	5.19	0.8849
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.009G058200 [exp]	12.16	0.8734
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	12.48	0.8741
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	13.92	0.8810	PE6.1
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073800 [exp]	19.10	0.8633
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	19.20	0.8580
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	23.23	0.8624
AT2G16250			Leucine-rich repeat protein ki...		Potri.002G260100 [exp]	25.92	0.8588
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.005G229700 [exp]	34.49	0.8102
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	45.90	0.8282

Compare expression of checked genes

Potri.004G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.