Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 742 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 728 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 660 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 635 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 632 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 604 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 602 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 585 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 580 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G27300 575 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 1113 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 1064 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 1045 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 1037 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 1033 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 825 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 811 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 811 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 688 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024064 [exp] 898 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 885 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10007604 [exp] 851 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 809 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 806 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 805 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 803 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 801 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 800 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030768 [exp] 797 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G028300.1 pacid=42795026 polypeptide=Potri.004G028300.1.p locus=Potri.004G028300 ID=Potri.004G028300.1.v4.1 annot-version=v4.1 ATGATTGCCAAAAAACGTTTTCTACATTCTATGTTTCTTCTAACCCTCCAATTCACTTCATGTACTTACATGGACGCCATAAAGACAAACCAGACAGTTA AAGATGGAAGCCTTGTAATCTCCAAAGAAAACAATTTTGCATTAGGATTTTTTAGCCTTGGTAATTCAAGCTTTAGATACCTTGGAATTTGGTATCATAA GGTACCTGAACAAACTGTTGTGTGGGTGGCAAATAGAGGGCATCCAATCAATGGCTCCTCAGGGTTTCTCTCCATCAACCAATATGGAAACCTCGTCCTC TATGGTGACTCTGACCGAACGGTTCCAGTATGGTCTGCAAATTGTTCTGTTGGATATACTTGTGAAGCTCAGCTTTTGGATTCAGGAAATCTGGTTCTGG TCCAGACTACAAGTAAGGGAGTTGTGTGGCAAAGTTTTGATTATCCTACTGATACCATGCTAGCAGGAATGAAACTTGGTTTAAATAGGAAAACAGGTCA GGAACTGTTTCTGACATCATGGAGATCAGCAGATGACCCTGCAACCGGGGACTTCTCGTTTAAGCTCTTTCCCAGTAGCTTACCACAATTCTTTCTCTAC AGGGGTACAAAACGTTATTGGCGAACAGCCTCGTGGCCATGGAGAGGCCAGTGGCAATTGTACAAGGAAAGCTTCGTAAACATTCAAGATGAAGTATACT TTGTCTACACACCTATTGATGATTCCATTATCCTTAGAATAATGGTGGATCATACAGGGTTTTTGAAGGTTGTAACATGGCATGTAAGTGACCACAAATG GAAGGAGTTCTGGGCAGCACCTAAGCACCAATGTGATTGGTATGGAAAATGTGGTGCTTATAGCACGTGTGAACCTGTTGACATTACCAGGTATGAGTGC GCTTGTTTGCCTGGATATGAACTCAAGGATGCAAGGAACTGGTATCTGAGAGATGGGTCTGGTGGTTGTGTCAGCAAGGGACTAGAATCCTCCTCAGTGT GCGATCCTGGAGAAGGGTTTGTGAAGGTGGACAAAGTATTACTTCCTGATTCTTCATTTGCAGTTTGGGTGAACACAAGTATGAGTCGTGCAAACTGCGA AAAGCAATGCCAGATGAATTGCTCATGCTCTGCGTATGCAATTGTAGATGCTCCAGGAATAGCAAAGGGCTGCATTACATGGCATGGAGAATTAATGGAC ACAACATATGATAGGAATGACAGATATGATCTGTATGTTCGTGTTGATGCGCTTGAATTAGCTGAGAATGCAAGGAAATCAAAAGGTTCTCATGAAAAGG GGTTGCTGACCGTTCTTATTCCAGCTGTTTTATCAACATCGTTGATCATTAGCGTGCTTGGTTATTTGTGGCTCAGGAAGAGAGGAGAAAAAGAGACTTG GGTGGCAAACGAGCTCCGGAGAAGTGGCAATGATGTAGACTTGGATTTCTTCAAGCTCAGCACACTATCTGCTGCCACAAAAAACTTCTCCCCAGATAAC AAACTTGGGGAAGGTGGTTTTGGTTCAGTTTACAAGGGTCAGCTACCTAATGGGGAGGAGATTGCTGTCAAAAGACTCTCAAAAAATTCAGGACAAGGAA TAGAAGAATTTACAAATGAAGTCAAGGTAATTGGGAAGCTTCAACACAGGAATCTTGTGAAACTTGTAGGCTGTTGCATTCAGGGAGGAGAACCGATGCT AATTTACGAATACTTGCCAAACAAAAGCTTAGACTCATTTCTTTTTGATGAAACAAGAGAACTGTTCCTGGATTGGAGCACACGGTTTGTCATTATAGTT GGCATCGCTCGTGGGATTCTATATCTTCACCAGGACTCAAGGTTGAGAATCATTCACAGGGACTTGAAATGTAGCAACATTCTATTAGATGCAGAGATGA CCCCAAAAATCTCAGATTTTGGAATGGCTAGAATATTTGGAAGGGACCAAATACAAGACGAGACACGTAGAGTTATGGGAACATTTGGATACATGTCACC AGAGTATGCTGCGTTTGGCAAAATTTCGGTGAAATCAGATGTGTTTAGTTTCGGGGTTATGTTATTAGAGATTGTAAGTGGCAAGAGGAACAACAGATAT AATCTACAGGATTCTTCCTTGACCTTGATTGGGCATGTGTGGGAGCTATGGAGAGAAGAGAGAGCGTTGGAGATAGTTGATTCATCATTGCAGGAGTTAT ATCACCCTCAAGAAGTCTTGAAATGCATTCAAATCGGGCTCTTGTGTGTGCAAGAAAATGCTATGGACAGACCCTCCATGTTAGCTGTTGTTTTCATGTT GAGTAGTTCTGAAGCAGCTATTCCTTCTCCAAAAGAACCTGCATTCATTTTTAGAGAAATTTGCAGTAAGCCTCATACCCTAATTGAGGTACAAGAAGAT GATGATGGTGGTGGTGGTGGAGTAGAATTAGCTATAAATAAACACGGCTGA
AA sequence Show only first row Show all	>Potri.004G028300.1 pacid=42795026 polypeptide=Potri.004G028300.1.p locus=Potri.004G028300 ID=Potri.004G028300.1.v4.1 annot-version=v4.1 MIAKKRFLHSMFLLTLQFTSCTYMDAIKTNQTVKDGSLVISKENNFALGFFSLGNSSFRYLGIWYHKVPEQTVVWVANRGHPINGSSGFLSINQYGNLVL YGDSDRTVPVWSANCSVGYTCEAQLLDSGNLVLVQTTSKGVVWQSFDYPTDTMLAGMKLGLNRKTGQELFLTSWRSADDPATGDFSFKLFPSSLPQFFLY RGTKRYWRTASWPWRGQWQLYKESFVNIQDEVYFVYTPIDDSIILRIMVDHTGFLKVVTWHVSDHKWKEFWAAPKHQCDWYGKCGAYSTCEPVDITRYEC ACLPGYELKDARNWYLRDGSGGCVSKGLESSSVCDPGEGFVKVDKVLLPDSSFAVWVNTSMSRANCEKQCQMNCSCSAYAIVDAPGIAKGCITWHGELMD TTYDRNDRYDLYVRVDALELAENARKSKGSHEKGLLTVLIPAVLSTSLIISVLGYLWLRKRGEKETWVANELRRSGNDVDLDFFKLSTLSAATKNFSPDN KLGEGGFGSVYKGQLPNGEEIAVKRLSKNSGQGIEEFTNEVKVIGKLQHRNLVKLVGCCIQGGEPMLIYEYLPNKSLDSFLFDETRELFLDWSTRFVIIV GIARGILYLHQDSRLRIIHRDLKCSNILLDAEMTPKISDFGMARIFGRDQIQDETRRVMGTFGYMSPEYAAFGKISVKSDVFSFGVMLLEIVSGKRNNRY NLQDSSLTLIGHVWELWREERALEIVDSSLQELYHPQEVLKCIQIGLLCVQENAMDRPSMLAVVFMLSSSEAAIPSPKEPAFIFREICSKPHTLIEVQED DDGGGGGVELAINKHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028300 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009200 [exp]	4.47	0.9162
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	8.83	0.9164
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	10.95	0.9212
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G099200 [exp]	14.38	0.8631
AT3G57680			Peptidase S41 family protein (...		Potri.006G055400 [exp]	18.70	0.9117
AT1G02260			Divalent ion symporter (.1)		Potri.017G141600 [exp]	19.79	0.8962
					Potri.017G111100 [exp]	23.36	0.9071
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	27.33	0.9054	IAGLU.2
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040600 [exp]	31.63	0.8970
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	33.40	0.8975

Compare expression of checked genes

Potri.004G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.