Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 884 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 860 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 751 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 713 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 712 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 682 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G27290 681 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 649 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 644 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 634 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028600 [exp] 1623 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 1536 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 823 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 811 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 808 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 805 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 798 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 790 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 778 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006746 [exp] 992 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 981 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 904 / 0 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 813 / 0 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 780 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024064 [exp] 776 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 754 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 744 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 721 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 714 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.004G028466.1 pacid=42793985 polypeptide=Potri.004G028466.1.p locus=Potri.004G028466 ID=Potri.004G028466.1.v4.1 annot-version=v4.1 ATGAATCCTATAGAAACGTTTTTGAGTGCATTGTTTCTCTTCCTTGTTTTTCCTTCTTGCTTATCTATTGACATCATAGCTCCAAACCAATCAATCAAAG ATGGAGATGTTCTGGTCTCTAGTGGACAAAGCTATGAACTCGGGTTCTTCAGCACAGGCATCGATTCTACTCGTCGTTATGTGGGAATTTGGTGCCGTAA GGTTTCAGAACGAACTGTTGTATGGGTGGCAAATAGAGACAATCCTATCAATGGTACCTCCGGAGTCCTAGCTATCAACAAACAAGGTAACCTTGTAATT TATGAAAATAACCGAAGTAGTGTTCCTGTTTGGTCTACAAATGTTGCAGCCTCATCAATGACAAATTGCACGGCTCAGCTCCAGGATTCAGGAAACTTGG TCTTGGTTCAACAGGATAGCAAAAGGGTCTTGTGGCAGAGTTTTGATCATGCTACAGACACTCTGCTTCCTGGTATGAAGCTTGGGCTGGACCTGAAAAT CGGTTTCAACCGGTCTCTGTCATCTTGGAAGTCCAAAGATGACCCGGGAACCGGAACCATTGTCCTTGGTATTGATCCAAGTGGGTTTCCCCAGTTGTTC CTATACAAGGGTCAAACCCGAAGTTGGCGTGTCGGACCATGGACTGGACTAAGATGGAGCGGGGTACCCCAAATGGCCACGTCCTACATCTACGGTAATA CTTTCGTTAGCAGTGTTGATGAGGTATCTTATTCCTATAGTATCAATAATCCCTCCTTGATTTCAAGAATGGTGGTGAACGAATCAGGAGTAGTGCAACG GCTGACATGGAACGATCCTGATAAACAATGGTTCGGAATTTGGTACGCCCCAAAAGAACCATGTGACACCTATGGCCAATGTGGTCCAAATACTAACTGT GACCCATATCAAACAAATACTTTCATGTGCAAATGTCTACCCGGATTCGAACCCAAGTCACCCCAAGAATGGTACCTGAGAGAGGGGTCAAGAGGTTGTG TCAGGAAACCTAACGTGTCCACGTGTCACGGCGGAGAAGGGTTCGTCAAGCTGGCTCGAGTGAAGGTGCCGGATACATCAATGGCGAGTGCGAACATGAG TTTGAGATTGAAAGAATGTGCGCGAGAGTGCTTGAGGAATTGTTCTTGTACAGCTTATGCTAGTGCTGACGAAAGAGGACTTGGATGCTTGAGATGGTAT GGTGATCTGGTGGATACAAGAACGTTTTCAGATGTGGGGCAAGAGATTTACATCCGTGTGGATAGAGCTGAATTAGCTAAGTATGAAAAGTCAGGACCTC TTGCCAATAAAGGAATACAAGCAATCCTGATAGTGTCTGTTGATGTGCCATTGTTTCTGATCATCCTCCTTGTGTGTTGGTTTGTAAAGAAAAGGAGAAA AGCCAGGGACAGGAAAAGAAGAAACGAATTTCCGCTATCATTAACTTCAAGGTCAAATAGCTGGAGAGACTTACCAATTAAGGAATTTGAGGAAGGTACA ACAAGTTCAGATTTACCACTTTTTGATCTTAGTGTCGTGGCTGCGGCAACAAATAATTTCTCAGGTGCCAACAAGCTTGGAGAGGGTGGTTTTGGCTCAG TGTATAAGGGTCTGCTGCATGATGGAAAGGAAATTGCTGTCAAAAGACTAGCAAAGTATTCTGGACAAGGGATTAATGAGTTCAGAAATGAGGTCGAGCT CATTGCAAAACTTCAGCACAGGAATCTTGTAAGGATATTAGGTTGTTGCATCCAAGGAAGAGAGAAGATGTTGATCTATGAATACTTGCCAAATAAAAGT TTGGACTCTTTTATTTTCAATGAACCAAGAAGGTCACAGTTAGATTGGTCTACTCGCCACAACATTATTTGTGGGATTGCTCGAGGAATTTTGTATCTTC ATGAGGACTCCAGATTACGAATCATCCACAGAGATCTTAAGGCAAGCAATGTTCTACTAGATGCCTCAATGAACCCAAAAATTTCAGATTTCGGCATGGC TAGAATATTTGGAGTAGACCAAATTGAAGCCAACACAAACCGTGTTGTTGGAACGTATGGTTATATGTCACCAGAATATGCAATGCAAGGCCTATTTTCA GTAAAATCCGATGTATATAGTTTCGGGGTTTTGCTATTAGAGGTCATCACTGGGAGAAAAAACAGCCATTTTTATGATAAAAGTAACTCTTCGAACTTGG TTGGATATGTTTGGGATCTATGGACAGAAGGCAGGGCCCTGGAACTAGTGGATACATTGATGGGCAACTCGTATCCTGAAGATCAAGTCTTAAGGTGCAT CCAAATTGGTCTTTTATGTGTGCAAGAATCTGCGATGGACCGACCATCAATGTCTAGTGTTGTTTTCATGTTGAGTAATGACACAACTCTTCCATCTCCT AAGCAACCTGCGATTATTCTGAAGAAGAGTTACAACAGTGGAGATCCATCAACAAGTGAAGGATCGCATTCTATAAATGAAGTGACTATAACCATGCTTG GACCTCGGTAA
AA sequence Show only first row Show all	>Potri.004G028466.1 pacid=42793985 polypeptide=Potri.004G028466.1.p locus=Potri.004G028466 ID=Potri.004G028466.1.v4.1 annot-version=v4.1 MNPIETFLSALFLFLVFPSCLSIDIIAPNQSIKDGDVLVSSGQSYELGFFSTGIDSTRRYVGIWCRKVSERTVVWVANRDNPINGTSGVLAINKQGNLVI YENNRSSVPVWSTNVAASSMTNCTAQLQDSGNLVLVQQDSKRVLWQSFDHATDTLLPGMKLGLDLKIGFNRSLSSWKSKDDPGTGTIVLGIDPSGFPQLF LYKGQTRSWRVGPWTGLRWSGVPQMATSYIYGNTFVSSVDEVSYSYSINNPSLISRMVVNESGVVQRLTWNDPDKQWFGIWYAPKEPCDTYGQCGPNTNC DPYQTNTFMCKCLPGFEPKSPQEWYLREGSRGCVRKPNVSTCHGGEGFVKLARVKVPDTSMASANMSLRLKECARECLRNCSCTAYASADERGLGCLRWY GDLVDTRTFSDVGQEIYIRVDRAELAKYEKSGPLANKGIQAILIVSVDVPLFLIILLVCWFVKKRRKARDRKRRNEFPLSLTSRSNSWRDLPIKEFEEGT TSSDLPLFDLSVVAAATNNFSGANKLGEGGFGSVYKGLLHDGKEIAVKRLAKYSGQGINEFRNEVELIAKLQHRNLVRILGCCIQGREKMLIYEYLPNKS LDSFIFNEPRRSQLDWSTRHNIICGIARGILYLHEDSRLRIIHRDLKASNVLLDASMNPKISDFGMARIFGVDQIEANTNRVVGTYGYMSPEYAMQGLFS VKSDVYSFGVLLLEVITGRKNSHFYDKSNSSNLVGYVWDLWTEGRALELVDTLMGNSYPEDQVLRCIQIGLLCVQESAMDRPSMSSVVFMLSNDTTLPSP KQPAIILKKSYNSGDPSTSEGSHSINEVTITMLGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028466 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028600 [exp]	1.41	0.9641
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088632 [exp]	6.70	0.9492
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088400 [exp]	7.48	0.9418
AT2G35260			unknown protein		Potri.001G143400 [exp]	10.19	0.9502
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	11.74	0.9593
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.018G127100 [exp]	18.49	0.8983	Pt-CBP1.4
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Potri.008G169100 [exp]	22.84	0.9508
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.016G008500 [exp]	25.19	0.9043
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.001G438700 [exp]	26.72	0.9421
AT1G49010	MYB		Duplicated homeodomain-like su...		Potri.012G060300 [exp]	27.49	0.9307

Compare expression of checked genes

Potri.004G028466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.