Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 899 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 890 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 762 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 727 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 716 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 705 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 686 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 657 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 649 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61390 644 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028600 [exp] 1560 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 1555 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 852 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 836 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 832 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 826 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 820 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 820 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 787 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006746 [exp] 1018 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 1010 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 931 / 0 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 823 / 0 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 805 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 790 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10038557 [exp] 754 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 746 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 738 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 724 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.004G028701.1 pacid=42796612 polypeptide=Potri.004G028701.1.p locus=Potri.004G028701 ID=Potri.004G028701.1.v4.1 annot-version=v4.1 ATGCTTTTTATTTTTGTGATTCTCTTTTCTTTTCTTTTATGTTTTTCTCTCGTGTTTCTTGTTTTTGGCTACCTTGTGGTTAGCCCTTTCAATCAATATA TCGTCTTATTCCAAAAAAAATCTACTCACCTCACCAACACACAATCATTGAACCAAATTATGAATCCTATAGAAAGGTTTTTGAGTGCATTGTTTTTCTT CCTTGTTTTTCCTTCTTGCTTATCTATTGACATCATAGCTCCAAACCAATCAATCAAAGATGGAGATGTTCTGGTCTCTAGTGGACAAAGCTATGAACTC GGGTTCTTTAGCTCAGGCATCGATTCTACTCGTCGTTATGTGGGAATTTGGTACCATAAGGTTTCAGAACGAACTGTTGTATGGGTGGCAAATAGAGATA ATCCTATCAATGGTACCTCCGGATTCCTAGCTATCAACAAACAAGGTAACCTTGTAATTTATGAAAATAACCGAAGTAGTGTTCCTGTTTGGTCTACAAA TGTTGCAGCCTCATCAATGACAAATTGCACGGCTCAGCTCAAGGATTCAGGAAACTTGGTCTTGGTTCAACAGGATAGCAAAAGGGTCTTGTGGCAGAGT TTTGATCATGGTACAGATACTCTGCTTCCTGGTATGAAGCTTGGGCTGGACCTGAAAATCGGTTTGAACCGGTTTCTGTCATCTTGGAAGTCCAAAGATG ACCCGGGAACCGGAAACATTCTCTATGGTTTGGATCCAAGTGGGTTTCCCCAGTTCTTCCTATACAAGGGTCAAACCCCATTGTGGCGTGGCGGACCATG GACTGGACTAAGATGGAGCGGAATACCCGAAATGATCGCTACCTACATCTTCAATGCTACTTTCGTTAACAGCATTGATGAGGTATCTATATTCTATACT ATGAATAATCCCTCCATCATTTCAAGAGTGGTGGTGAACGAATCAGGAGGAGTGCAGCGGCTGTCGTGGGACGATCGTGGTAAAAAATGGATCGGAATAT GGTCCGCCCCAAAAGAACCATGTGACACCTATCGCCAATGTGGTCCAAATAGTAACTGTGACCCATATCAAACAAATAAGTTCATGTGCAAATGTCTACC CGGATTCGAACCCAAGTCACCCCAAGAATGGTACCTGAGAGATTGGTCAGGAGGTTGTGTCAGGAAACCTAAAGTGTCCACGTGTCACGGCGGAGAAGGG TTCGTCGAGGTGGCTCGAGTGAAGTTGCCGGATACATCAATAGCGAGTGCGAACATGAGTTTGAGATTGAAAGAATGTGAGCAAGAGTGCTTGAGGAATT GTTCTTGTACAGCTTATGCTAGTGCTGACGAAAGAGGACTTGGATGCTTGAGATGGTATGGTGATCTGGTTGATACAAGAACGTTTTCAGATGTGGGGCA AGAGATTTACATCCGTGTGGATAGAGCTGAATTAGTTCCAGCTAAATATGAAAAGTCAGGACCTCTTGCCAATAAAGGAATACAAGCAATCCTGATAGTG TCTGTTGGTGTGACATTGTTTCTGATCATCTTCCTTGTGTGTTGGTTTGTAAAGAAAAGGAGAAAAGCCAGGGACAGGAAAAGAAGAAACGAATTTCCGC TATCATTAACTTCAAGGTCAAATAGCTGGAGAGACTTACCAATTAAGGAATTTGAGGAAGGTACAACAAGTTCAGATTTACCACTTTTTGATCTTAGTGT CATGGCTGCGGCAACAAATAATTTCTCAGATGCCAACAAGCTTGGAGAGGGTGGTTTTGGCTCGGTGTATAAGGGTCTGCTGCATGATGGAAAGGAAATT GCTGTCAAAAGACTAGCAAAGTATTCTGGACAAGGGATTAATGAGTTCAGAAATGAAGTCGAGCTCATTGCAAAACTTCAGCACAGGAATCTTGTAAGGA TATTAGGTTGTTGCATCCAAGGAAGAGAGAAGATGTTGATCTATGAATACTTGCCAAATAAAAGTTTGGACTCTTTTATTTTCAATGAACCAAGAAGGTC ACAGTTAGATTGGTCTACTCGCCACAACATTATTTGTGGGATTGCTCGAGGAATTTTGTATCTTCATGAGGACTCCAGATTACGAATCATCCACAGAGAT CTTAAGGCAAGCAATGTTCTACTAGATGCCTCAATGAACCCAAAAATTTCAGATTTCGGCATGGCTAGAATATTTGGAGTAGACCAAATTGAAGCCAACA CAAACCGTGTTGTAGGAACGTATGGTTATATGTCACCAGAATATGCAATGCAAGGCCTATTTTCAGTAAAATCCGATGTATATAGTTTCGGGATTTTGCT ATTAGAGGTCATCACTGGAAGAAAAAACAGCAATTTTTATGATGAAAGTAACTTTTCGAGCTTGGTTGGATATGTTTGGGATCTATGGAGAGAAGGCAGG GCCCTGGAACTAGTGGATACATTGATGGGCGACTCGTATCCTGAAGATCAAGTCTTAAGGTGCATCCAAATTGGTCTTTTATGTGTGCAAGAATCTGCGA TGGACCGACCATCAATGTCTAATGTTGTTTTCATGTTGAGTAATGACACAACTCTTCCATCTCCTAAGCAACCTGCGTTTATTCTGAAGAAGAGTTACAA TAGTGGAGATCCATCAACAAGTGAAGGATCGCATTCTATAAATGAAGTGACTATCACCATGCTTGGACCTCGGTAG
AA sequence Show only first row Show all	>Potri.004G028701.1 pacid=42796612 polypeptide=Potri.004G028701.1.p locus=Potri.004G028701 ID=Potri.004G028701.1.v4.1 annot-version=v4.1 MLFIFVILFSFLLCFSLVFLVFGYLVVSPFNQYIVLFQKKSTHLTNTQSLNQIMNPIERFLSALFFFLVFPSCLSIDIIAPNQSIKDGDVLVSSGQSYEL GFFSSGIDSTRRYVGIWYHKVSERTVVWVANRDNPINGTSGFLAINKQGNLVIYENNRSSVPVWSTNVAASSMTNCTAQLKDSGNLVLVQQDSKRVLWQS FDHGTDTLLPGMKLGLDLKIGLNRFLSSWKSKDDPGTGNILYGLDPSGFPQFFLYKGQTPLWRGGPWTGLRWSGIPEMIATYIFNATFVNSIDEVSIFYT MNNPSIISRVVVNESGGVQRLSWDDRGKKWIGIWSAPKEPCDTYRQCGPNSNCDPYQTNKFMCKCLPGFEPKSPQEWYLRDWSGGCVRKPKVSTCHGGEG FVEVARVKLPDTSIASANMSLRLKECEQECLRNCSCTAYASADERGLGCLRWYGDLVDTRTFSDVGQEIYIRVDRAELVPAKYEKSGPLANKGIQAILIV SVGVTLFLIIFLVCWFVKKRRKARDRKRRNEFPLSLTSRSNSWRDLPIKEFEEGTTSSDLPLFDLSVMAAATNNFSDANKLGEGGFGSVYKGLLHDGKEI AVKRLAKYSGQGINEFRNEVELIAKLQHRNLVRILGCCIQGREKMLIYEYLPNKSLDSFIFNEPRRSQLDWSTRHNIICGIARGILYLHEDSRLRIIHRD LKASNVLLDASMNPKISDFGMARIFGVDQIEANTNRVVGTYGYMSPEYAMQGLFSVKSDVYSFGILLLEVITGRKNSNFYDESNFSSLVGYVWDLWREGR ALELVDTLMGDSYPEDQVLRCIQIGLLCVQESAMDRPSMSNVVFMLSNDTTLPSPKQPAFILKKSYNSGDPSTSEGSHSINEVTITMLGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028701 [exp]	0	1
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	2.00	0.9260	Pt-MYB94.1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.010G078300 [exp]	5.29	0.8892	Pt-IAA14.2
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	7.07	0.9212
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	8.71	0.9034
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	13.67	0.8798
AT4G16447			unknown protein		Potri.016G009200 [exp]	14.07	0.8700
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.018G111900 [exp]	20.59	0.8890
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	20.73	0.8814
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	25.57	0.8910
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.004G229600 [exp]	42.33	0.8774

Compare expression of checked genes

Potri.004G028701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.