Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27270 352 / 3e-125 Quinone reductase family protein (.1) AT5G54500 345 / 2e-122 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT5G58800 275 / 1e-94 Quinone reductase family protein (.1.2) AT4G36750 271 / 1e-92 Quinone reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G033100 [exp] 385 / 2e-138 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.001G410700 [exp] 361 / 6e-129 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G129400 [exp] 356 / 4e-127 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.009G044400 [exp] 276 / 3e-95 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2) Potri.004G151100 [exp] 261 / 1e-88 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.005G126200 [exp] 260 / 3e-88 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.007G029600 [exp] 259 / 4e-88 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018401 [exp] 350 / 2e-124 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10007612 [exp] 336 / 2e-118 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10006748 [exp] 327 / 2e-115 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10020076 [exp] 320 / 7e-113 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10041718 [exp] 272 / 6e-93 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 270 / 3e-92 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10014325 [exp] 266 / 8e-91 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10005862 [exp] 254 / 5e-87 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2) Lus10040486 [exp] 236 / 7e-79 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10024032 [exp] 194 / 1e-63 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [poplar] [flax] Flavoprotein PF03358 [poplar] [flax] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Potri.004G028900.1 pacid=42795470 polypeptide=Potri.004G028900.1.p locus=Potri.004G028900 ID=Potri.004G028900.1.v4.1 annot-version=v4.1 ATGGCTGTAAAAATCTATATTATTTACTACTCCATGTATGGACATGTTGCACGGTTAGCTGAAGAAATTAAGAAAGGAGCTGATTCTGTAGAAGGAGTAG AAGTTAAGCTATGGCAGGTACCTGAAACACTGCCAGAAGAAGTTCTTGGAAAGATGGGTGCACCACCAAAGAGTGATGTCCCAATTATTACACCCAGTGA TCTTGCTGAGGCTGATGGGTTTCTTCTTGGTTTCCCCACTAGATTTGGAATGATGGCCGCACAATTTAAAGCTTTTATGGATTCAACTGGTGGCCTATGG GGCACACAACAGCTTGCAGGCAAGCCTGCTGGAATTTTTTACAGCACTGCATCGCAGGGAGGTGGACAGGAGACAACCGCTTTGACTGCTATCACCCAGC TCGTTCACCATGGAATGATCTTTGTGCCAATTGGATACACATTTGGAGCCGGCATGTTTGAAATTGAGAAAGTGAAGGGTGGCAGTCCATATGGTGCAGG TACCTATGCTGGGGATGGCACCAGACAGCCTACTGAGCTGGAGCTAGGACAAGCTCTCCACCAGGGGAAGTACTTTGCTGGCATTGCAAAGAAATTCAAG GGAACTGCTTAA
AA sequence Show only first row Show all	>Potri.004G028900.1 pacid=42795470 polypeptide=Potri.004G028900.1.p locus=Potri.004G028900 ID=Potri.004G028900.1.v4.1 annot-version=v4.1 MAVKIYIIYYSMYGHVARLAEEIKKGADSVEGVEVKLWQVPETLPEEVLGKMGAPPKSDVPIITPSDLAEADGFLLGFPTRFGMMAAQFKAFMDSTGGLW GTQQLAGKPAGIFYSTASQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEIEKVKGGSPYGAGTYAGDGTRQPTELELGQALHQGKYFAGIAKKFK GTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27270			Quinone reductase family prote...		Potri.004G028900 [exp]	0	1
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	6.48	0.9265
AT5G26330			Cupredoxin superfamily protein...		Potri.010G089900 [exp]	7.14	0.9216
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.010G221600 [exp]	7.48	0.8968
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.009G027900 [exp]	8.71	0.8895	RAB8.1
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.001G420200 [exp]	8.77	0.8740	Pt-GPT.4
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.019G128900 [exp]	10.48	0.9163
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	10.58	0.9193	Pt-ARP2.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	10.95	0.9255
					Potri.018G139200 [exp]	11.40	0.8973
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	16.09	0.9083

Compare expression of checked genes

Potri.004G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.