Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11440 68 / 2e-13 unknown protein AT3G29075 49 / 7e-07 glycine-rich protein (.1) AT5G39570 43 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032700 [exp] 159 / 2e-47 AT1G11440 71 / 1e-13 unknown protein Potri.017G087200 [exp] 55 / 8e-09 AT5G39570 112 / 3e-27 unknown protein Potri.004G127400 [exp] 48 / 2e-06 AT5G39570 139 / 4e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018397 [exp] 69 / 7e-14 AT1G11440 98 / 2e-23 unknown protein Lus10007616 [exp] 67 / 2e-13 AT1G11440 100 / 2e-24 unknown protein Lus10029322 [exp] 52 / 4e-08 AT5G39570 144 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G029500.2 pacid=42794402 polypeptide=Potri.004G029500.2.p locus=Potri.004G029500 ID=Potri.004G029500.2.v4.1 annot-version=v4.1 ATGATGATGATTATCAGAGTGAGTACTATAACGACGCGGTTCATTGTCTCGTATAAGGTCTCCGAGTTTAACGAGACTGAGTTCGAAGAATACGATCCAA CTGCTTTTGGTGGTGGCTATGATCCTGCTGCAACTTACGGAAAACCTCTTCCTCCCTCGGACAAAATTTGTTACCCTAGTTCAACGCCGGATCCGAATGC CTTATCATTAATGGTGTCTCCTATGGATCGATTACAGCACCTTACGGAAAAGTTGAAGTCAATGAACCTGCTCCGAAACCTCGAAGTGAAAGGAAACCGC TTAGGCTTCCTGCTATTGAAGCAGCGCCGCTGTCCCCTTGAACATGGCAATGGCAAAGGAAATTCCCAAGAGAAGTCTCTAGTCTTGCATAAAGGTGAAG AAAGTGAGGAAAACGAGGGTGATCATCACGATTCTTTGCCTGGCTATGATGCTGGATATTGCAATGGATCAAGTGGAGAACTTGGTTACGAGTATGGCCA GGAAGTGCACAAATTCCATCAGGATATATATGGCTTGGAAGCAATGGACCTTTGTGAAAGTTATTTGGTTACTGGCCTTGTCTTTCTAGCATGCTAG
AA sequence Show only first row Show all	>Potri.004G029500.2 pacid=42794402 polypeptide=Potri.004G029500.2.p locus=Potri.004G029500 ID=Potri.004G029500.2.v4.1 annot-version=v4.1 MMMIIRVSTITTRFIVSYKVSEFNETEFEEYDPTAFGGGYDPAATYGKPLPPSDKICYPSSTPDPNALSLMVSPMDRLQHLTEKLKSMNLLRNLEVKGNR LGFLLLKQRRCPLEHGNGKGNSQEKSLVLHKGEESEENEGDHHDSLPGYDAGYCNGSSGELGYEYGQEVHKFHQDIYGLEAMDLCESYLVTGLVFLAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11440			unknown protein		Potri.004G029500 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	3.00	0.7799
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	3.16	0.8082
					Potri.001G168400 [exp]	3.16	0.7878
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	8.00	0.7755	Pt-HPT2.3
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Potri.004G183300 [exp]	10.58	0.6745
					Potri.003G065900 [exp]	11.61	0.7163
AT4G08330			unknown protein		Potri.005G178000 [exp]	15.87	0.7287
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	19.74	0.7213	Pt-SKOR.2
AT4G03130			BRCT domain-containing DNA rep...		Potri.014G135520 [exp]	21.16	0.6455
					Potri.016G013000 [exp]	21.44	0.7266

Compare expression of checked genes

Potri.004G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.