Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 376 / 3e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 296 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 182 / 1e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 179 / 4e-52 PPR336 pentatricopeptide repeat 336 (.1) AT4G36680 169 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 164 / 1e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 154 / 9e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 135 / 3e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 134 / 2e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032400 [exp] 534 / 0 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 520 / 0 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 510 / 0 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 360 / 3e-123 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G062700 [exp] 201 / 6e-61 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 197 / 2e-59 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 185 / 1e-54 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 171 / 2e-49 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.005G125400 [exp] 171 / 2e-49 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007619 [exp] 385 / 7e-133 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 380 / 1e-130 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 340 / 2e-114 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 333 / 4e-112 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018393 [exp] 327 / 1e-109 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 191 / 1e-56 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 189 / 2e-56 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 182 / 7e-54 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 176 / 1e-50 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 149 / 4e-41 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G029900.1 pacid=42794131 polypeptide=Potri.004G029900.1.p locus=Potri.004G029900 ID=Potri.004G029900.1.v4.1 annot-version=v4.1 ATGTCGGCTTTATCCCGCCTTTTCCGCAGCACATTCTCCACCGCCACCTCCGCCGCAGCAACCGAAAACACCATCGTCAGATCACTCTCTAACGAAGTTT TCAGAGAACGCAGCCTCAAACGTCTTGTTGAAAAATTCAAAAAAGCTTCCGAAAATGAGAGGTTTCGAACTAAAAGTGCCATTTACAAAGACACCATTCG CCGCCTCGCAGCTGCCAAAAAGTTTCGCTACGTAGAAGAGATTCTAGAGAACCAGAAGCAGTATCAGGACATGTCGAAAGAAGGTTTTAATGCTCGTTTG ATTTCTCTTTATGGTTCATCGGGCATGTTCGATAATGCGCGCAAGGTGTTTGATGAAATGCTTGAAAGAAAATGTGCCCGGACGGTGCTGTCTTTCAATG CGCTGTTGGGGGCTTGTGTTAATTCGAAGAAGTTTGATGAAGTTGGTGGTTTATTTAGAGGGTTATCGGAGGAGTTAGAGATTGAACCGGATTTGGTTTC GTATAACACGGTCATGAAGGCCTTTTGCGAGATGGGTTCGTTGGATTCGGCTGTTTCGTTGCTAGATGAGATTGAGAAGAAGGGTTTGAAGCCTGATTTG ATTACTTTTAATACGCTCTTAAATGGGCTTTATGCGAATGGAAGGTTTGATGCTGGGGAGAGGATTTGGCAGCGAATGAAGGAAAAAAATGTTAAGCCTG ATGGCAGGAGTTATAATGAGAAGTTGCTTGGATTGGCATTGGAGAAGAGAATGAAAGATGCGACTAAGGTTGTTGAAGAAATGAAGAGCGAGGGGATTGA ATTTGATATCTTTAGTTACAATGCTTTGATTAGAGGGTTTGTTAATGAGGGTGATTTGGAGGAAGCCAAGGGTTGGTATGGTGAGATAAGGAAATCTGAT ATTAAACCAGATAAATTGACTTTTAAGACATTGATTCCTTTCGTTGTTGAGAAGGGTGATGTTGCCTTTGCCTTTGATCTTTGCAAGGATGCTCTCTCTA GCAAGTTGGCTGTTAAGGAGGCACTGATACAACCTGTGCTGGATGCATTGGCTAAGGAGTCAAAGATCAATGAAGCAAAGGAGCTTGTGGAACTCAGCAA GGCACGTCGTTCCGATTCTTTGAAGTTGACATTGCCTTCAATATAG
AA sequence Show only first row Show all	>Potri.004G029900.1 pacid=42794131 polypeptide=Potri.004G029900.1.p locus=Potri.004G029900 ID=Potri.004G029900.1.v4.1 annot-version=v4.1 MSALSRLFRSTFSTATSAAATENTIVRSLSNEVFRERSLKRLVEKFKKASENERFRTKSAIYKDTIRRLAAAKKFRYVEEILENQKQYQDMSKEGFNARL ISLYGSSGMFDNARKVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDL ITFNTLLNGLYANGRFDAGERIWQRMKEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVNEGDLEEAKGWYGEIRKSD IKPDKLTFKTLIPFVVEKGDVAFAFDLCKDALSSKLAVKEALIQPVLDALAKESKINEAKELVELSKARRSDSLKLTLPSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	0	1
AT4G11060		MTSSB	mitochondrially targeted singl...		Potri.013G011800 [exp]	1.41	0.8694
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	1.73	0.8728
AT3G49990			unknown protein		Potri.005G234800 [exp]	3.46	0.8582
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	4.47	0.8345
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	8.06	0.8507	Pt-CPN60.2
AT5G11630			unknown protein		Potri.006G237800 [exp]	9.48	0.8385
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	9.79	0.8325	Pt-SYNC3.1
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	9.94	0.8330
AT5G64650			Ribosomal protein L17 family p...		Potri.005G061700 [exp]	10.19	0.8066
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	10.53	0.7930

Compare expression of checked genes

Potri.004G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.