Plant FIBer expression Database

Potri.004G030100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44870 249 / 3e-83 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009575
[exp]
266 / 1e-89 AT2G44870 219 / 2e-71 unknown protein
Lus10020395
[exp]
229 / 3e-74 AT2G44870 181 / 1e-55 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G030100.2 pacid=42793783 polypeptide=Potri.004G030100.2.p locus=Potri.004G030100 ID=Potri.004G030100.2.v4.1 annot-version=v4.1
ATGGCTACAGCTCTGTCATGGCAGCCCCAGCTGCCCACACGCATACACAAGCATTCACACCCGAGCTCCTTTATTGATGCTGGCACGGGATATGCTTTCC
AATGCCGCATCCACAGGCCAATCTCCTCCATCCATTCAGGCAAGGCACTTGCTTTCCGACGTGACTTTGATAGGTTTGCAAAAGATGCTTGGCGCACTGC
CAATGATGGATTTGAGCAGTTTCTTTTTGAGGCCAAGAAGACTGCTGAGCGTATTGACCGTAGATACTCAGTGTCACGACGCCTCAGCGCTGTAGCACAA
TCTGCTTCTGATCGTGCCCGTGAGATTGACAGAGAGTATGATATTAGTATTCGATGGCGCACTTTTTCCATGGATTTTAACAGAAATTGGCCTAGGTACA
GGAAGCAGATTAATGACTTTTTCAATACCCCGATAGGAAGGAGTTTTGTTACTATTTTTTTCCTCTGGTTTGCATTATCTGGGTGGATGTTTCGGCTCTT
CATAATTGCTACATGGGTTCTGCCGATTGCTGGACCTCTTCTCATTGGGACTTTGGCAAATAATCTTGTTATCAAGGGAGCTTGTCCAGCTTGTAAAAGA
CAGTTCGTTGGTTACAAGAACCAAGTGATTCGTTGTGGTGGCTGTGGTAACATCGTGTGGCAGCCTAAGGGGGGCTTTCCAGGCAGAGGGCCTGGGGATT
TCTTTTCAGGAGGTGGTAGAGGGACCAGGAGTTCAAAGTCAGATCCTGAGATCATTGATGTTGATTTTGAGGAAAAATCATGA
AA sequence
>Potri.004G030100.2 pacid=42793783 polypeptide=Potri.004G030100.2.p locus=Potri.004G030100 ID=Potri.004G030100.2.v4.1 annot-version=v4.1
MATALSWQPQLPTRIHKHSHPSSFIDAGTGYAFQCRIHRPISSIHSGKALAFRRDFDRFAKDAWRTANDGFEQFLFEAKKTAERIDRRYSVSRRLSAVAQ
SASDRAREIDREYDISIRWRTFSMDFNRNWPRYRKQINDFFNTPIGRSFVTIFFLWFALSGWMFRLFIIATWVLPIAGPLLIGTLANNLVIKGACPACKR
QFVGYKNQVIRCGGCGNIVWQPKGGFPGRGPGDFFSGGGRGTRSSKSDPEIIDVDFEEKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44870 unknown protein Potri.004G030100
[exp]
0 1
AT1G54780 AtTLP18.3, TLP1... thylakoid lumen protein 18.3, ... Potri.005G038700
[exp]
1.00 0.9852
AT3G04650 FAD/NAD(P)-binding oxidoreduct... Potri.005G055800
[exp]
2.00 0.9811
AT5G43860 ATCLH2 ARABIDOPSIS THALIANA CHLOROPHY... Potri.010G082300
[exp]
2.82 0.9779 ATCLH1.2
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Potri.001G074200
[exp]
3.87 0.9787
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059800
[exp]
4.24 0.9805
AT3G17170 RFC3 REGULATOR OF FATTY-ACID COMPOS... Potri.008G101900
[exp]
5.74 0.9766 Pt-RFC3.1
AT3G10350 P-loop containing nucleoside t... Potri.010G225100
[exp]
6.16 0.9735
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Potri.014G160600
[exp]
6.32 0.9797
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
7.00 0.9780 Pt-CLPR1.1
AT4G38225 unknown protein Potri.004G207400
[exp]
7.48 0.9757

Potri.004G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.