Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 466 / 2e-159 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 273 / 3e-85 AtTPS02 terpene synthase 02 (.1) AT4G16740 270 / 1e-83 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 266 / 5e-82 AtTPS10 terpene synthase 10 (.1) AT3G25830 251 / 3e-76 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 251 / 3e-76 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 249 / 3e-75 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 246 / 7e-75 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 205 / 8e-59 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 185 / 2e-51 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030400 [exp] 1034 / 0 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 402 / 1e-136 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G023006 [exp] 327 / 4e-105 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 326 / 1e-104 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 324 / 1e-104 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 322 / 3e-103 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G022338 [exp] 317 / 2e-101 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G085500 [exp] 305 / 3e-97 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 296 / 6e-94 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035240 [exp] 446 / 3e-152 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10000231 [exp] 416 / 2e-141 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018280 [exp] 415 / 2e-136 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018392 [exp] 403 / 9e-135 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10031590 [exp] 269 / 2e-83 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10018390 [exp] 263 / 2e-81 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10007622 [exp] 256 / 2e-81 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10007624 [exp] 255 / 5e-78 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10001110 [exp] 251 / 2e-76 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012312 [exp] 252 / 4e-76 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G030200.1 pacid=42796301 polypeptide=Potri.004G030200.1.p locus=Potri.004G030200 ID=Potri.004G030200.1.v4.1 annot-version=v4.1 ATGGCATTTCCCATCAATGATGGCAACTTCTCAGCATCCTTTCATCTTCCTAGCCTTGAGAATGAGCTATGCCTCAGACATGGAAAAATGGTGAAGGAAG CTGGGTGTATTCTCAGCAATACTGCTGGAAAAGATCCACTGGAAGGCTTAGTAATGATCGATACACTTCAACGCTTAGGCATTGACTATCACTTACGAGA GGAAATTGAAGCTTTTCTAAATACTCAATATATGAACTTTAGTTCTCCAAATCATCTTCCTCTTGATGTTTTTGGAGTTGCTCTTCGCTTTCGATTATTG AGACAAGAGGGTTATAATGTCTCTCAAGAGGTGTTTAACAACTTCAAGAATGAAGAGGGAAATTTTCATTTGATACAAGAAAATGACGTAAAGGGTTTGA TGGCATTGTATGAAGCTTCACAACTGAGTATGGAAAGTGAAGATATACTTGATGAAGCTGGAGAATTCAGTGCCAAGCTACTTAATCATCATGAATCAGA AATTGTTGCAAATACATTGAAGCATCCTTATCACAAGAGCTTGGCAAGGTTCATGGTCAAAAACTTCCTAAACAATATTGATATCCGAAATGAAAACATT AAGGTTTTTTCAGAGTTGGCGAAAATCGATTGTGAAATTGTACGATCTATACATCAGAAGGAAATTCTTCAGATTTCAAATTGGTGGAAAGACTTAGGCT TGGCTAAGGAGTTGAAATTCGCAAGAGACCAACCTCTAAAGTGGCACATGTGGTCCATGTCTGTCCTCATAGATCCTAACCTCTCTGAGCAAAGGGTCGA ATTAACTAAACCCATCTCTCTGGTCTACATCATCGACGACATTTTCGATCTTTACGGGACGCTCAATGACCTCTCTATCTTCACAGAAGCAGTCAATGAA TGGGACCTCACAGCCGCTAATCAGCTACCAGAAAGCATGAAGATTTCTCTCAAGGCTCTTTTCGACATCACTGAGAGCATTAGCACCAAGATTTTGGAAA AGCATGGATGGAACCCTATAGAATCCTTACAGAAATCGTGGAAAAAGTTGTGCAACGCATTTTTAGAAGAAGCAAAGTGGTTTGCTTCTGGGAAATTGCC AAAGCCAGAAGAATATTTGAGGAATGGAATTGTTAGTTCAGGTGTGCATGTGGTGCTGGTTCACATGTTCTTTCTCCTGGGCCAGGGCATCAACAAAGAA ACCGTTGATTTTGTGGTTGGCTTTCCTCCCATTATATCATTCACAGCAACGATCCTCCGTCTTTGGGATGACTTGGGCACTGCTAAGGATGAGAATCAAG ACGGTCATGACGGGTCCTACTTGGAGTGCTACATCAGAGAACATCCAAACGTTACGGTTGAAAGAGCGAGAGAGCACGTTAGCCATTTAATTTGTGATGC GTGGAAGAAACTGAACCAGGAATGTCTGTCTCGGTCACCATTTTCACCGTCTTTCACAAAAGCTTGTCTAAATGTCGCAAGAATGATTCCTTTGATGTAC AGTTATGATGACAATCCTGGTCTTGCAAGTCTCAAGGAGCACATGAGGTCACTTGCTGCTCATTTAGAAAGTAAACCTTTCTAG
AA sequence Show only first row Show all	>Potri.004G030200.1 pacid=42796301 polypeptide=Potri.004G030200.1.p locus=Potri.004G030200 ID=Potri.004G030200.1.v4.1 annot-version=v4.1 MAFPINDGNFSASFHLPSLENELCLRHGKMVKEAGCILSNTAGKDPLEGLVMIDTLQRLGIDYHLREEIEAFLNTQYMNFSSPNHLPLDVFGVALRFRLL RQEGYNVSQEVFNNFKNEEGNFHLIQENDVKGLMALYEASQLSMESEDILDEAGEFSAKLLNHHESEIVANTLKHPYHKSLARFMVKNFLNNIDIRNENI KVFSELAKIDCEIVRSIHQKEILQISNWWKDLGLAKELKFARDQPLKWHMWSMSVLIDPNLSEQRVELTKPISLVYIIDDIFDLYGTLNDLSIFTEAVNE WDLTAANQLPESMKISLKALFDITESISTKILEKHGWNPIESLQKSWKKLCNAFLEEAKWFASGKLPKPEEYLRNGIVSSGVHVVLVHMFFLLGQGINKE TVDFVVGFPPIISFTATILRLWDDLGTAKDENQDGHDGSYLECYIREHPNVTVERAREHVSHLICDAWKKLNQECLSRSPFSPSFTKACLNVARMIPLMY SYDDNPGLASLKEHMRSLAAHLESKPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030200 [exp]	0	1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	5.65	0.9883
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	9.79	0.9817
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.016G117500 [exp]	10.24	0.9022	Pt-FAD3.5
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	10.72	0.9780
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.009G002200 [exp]	12.84	0.8424
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	14.00	0.9809
					Potri.007G014501 [exp]	18.52	0.9809
AT5G15240			Transmembrane amino acid trans...		Potri.017G083500 [exp]	21.35	0.8556
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	21.65	0.9484
					Potri.017G120650 [exp]	24.24	0.9809

Compare expression of checked genes

Potri.004G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.