Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 467 / 6e-160 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 279 / 3e-87 AtTPS02 terpene synthase 02 (.1) AT4G16740 275 / 1e-85 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 273 / 2e-84 AtTPS10 terpene synthase 10 (.1) AT3G25830 258 / 9e-79 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 258 / 9e-79 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 256 / 5e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 252 / 7e-77 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 199 / 1e-56 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 189 / 8e-53 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030200 [exp] 1034 / 0 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 399 / 5e-135 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.019G023006 [exp] 334 / 4e-108 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 332 / 1e-107 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 325 / 2e-104 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 324 / 5e-104 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 320 / 1e-102 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 306 / 2e-97 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 297 / 4e-94 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035240 [exp] 444 / 1e-151 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10000231 [exp] 421 / 2e-143 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10018280 [exp] 418 / 8e-138 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018392 [exp] 401 / 5e-134 AT1G61680 350 / 1e-113 terpene synthase 14 (.1.2) Lus10031590 [exp] 272 / 2e-84 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10007622 [exp] 261 / 5e-83 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10018390 [exp] 264 / 2e-81 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10001110 [exp] 256 / 1e-78 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10007624 [exp] 255 / 5e-78 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10006355 [exp] 257 / 6e-78 AT2G24210 361 / 7e-117 terpene synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G030400.1 pacid=42794871 polypeptide=Potri.004G030400.1.p locus=Potri.004G030400 ID=Potri.004G030400.1.v4.1 annot-version=v4.1 ATGGCATTTCCCATCAATATTGATGGCAACTTCTCAGCATCCTTTCATCTTCCTAGCCTTGAGAATGAGCTATGCCTCAGACATGGAAAAATGGTGAAGG AAGCTGGGTGTATTCTCAGCAATACTGCTGGAAAAGATCCACTGGAAGGCTTAGTAATGATCGATACACTTCAACGCTTAGGCATTGACTATCACTTCCG AGAGGAAATTGAAGCTTTTCTAAATACTCAATATATGAACTTTAGTTCTCCAAATCATCTTCCTCTTGACGTTTGTGGAGTTGCTCTTCGCTTTCGATTA TTGAGACAAGAGGGTTATAATGTCTCTCAAGAGGTGTTTAACAACTTCAAGAATGAAGAGGGAAATTTTCATTTGATACAAGAAAATGACGTAAAGGGTT TGATGGCATTGTATGAAGCTTCACAACTGAGTATGGAAAGTGAAGATATACTTGATGAAGCTGGAGAATTCAGTGCCAAGCTACTTAATCATCATGAATC AGAAATTGTTGCAAATACATTGAAGCATCCTTATCACAAGAGCTTGGCAAGGTTCATGGTCAAAAACTTCCTAAACAATATTGATATCCGAAATGAAAAC ATCAAGGTTTTTTCAGAGTTGGCGAAAATCGATTGTGAAATTGTACGATCTATACATCAGAAGGAAATTCTTCAGATTTCAAATTGGTGGAAAGACTTAG GCTTGGCTAAGGAGTTGAAATTCGCAAGAGACCAACCTCTAAAGTGGCACATGTGGTCCATGTCTGTCCTCATAGATCCTAACCTCTCTGAGCAAAGGGT CGAATTAACTAAACCCATCTCTCTGGTCTACATCATCGACGACATTTTCGATCTTTACGGGACGCTCAATGACCTCTCTATCTTCACAGAAGCAGTCAAT GAATGGGACCTCACACCCGCTAATCAGCTACCAGAAAGCATGAAGATTTCTCTCATGGCTCTTTTCGACATCACTGAGAGCATTAGCACCAAGATTTTGG AAAAGCATGGATGGAACCCTATAGAATCCTTACAGAAATCGTGGAAAAAGTTGTGCAACGCATTTTTAGAAGAAGCAAAGTGGTTTGCTTCTGGGAAATT GCCAAAGCCAGAAGAATATTTGAGGAATGGAATTGTTAGTTCAGGTGTGCATGTGGTGCTGGTTCACATGTTCTTTCTCCTGGGCCAGGGCATCAACAAA GAAACCGTTGATTTTGTGGATGGCTTTCCTCCCATTATATCATTCACAGCAACGATCCTCCGTCTTTGGGATGACTTGGGCACTGCTAAGGATGAGAATC AAAACGGTCATGACGGGTCCTACTTGGAGTGCTACATCAGAGAACATCCAAACGTTACGGTTGAAAGAGCGAGAGAGCACGTTAGCCAATTAATTTGTGA TGCGTGGAAGAAACTGAACCAGGAATGCCTGTCTCGGTCACCATTTTCACAGTCTTTCACAAATGCTTGTCTAAATGTCGCAAGAATGATTCCTTTGATG TACAGTTATGATGACAATCCTGGTCTTGCAAGTCTCAAGGAGCACATGAGGTCACTTGCTGCTCATTTAGAAAGCAAACCTTTCTAG
AA sequence Show only first row Show all	>Potri.004G030400.1 pacid=42794871 polypeptide=Potri.004G030400.1.p locus=Potri.004G030400 ID=Potri.004G030400.1.v4.1 annot-version=v4.1 MAFPINIDGNFSASFHLPSLENELCLRHGKMVKEAGCILSNTAGKDPLEGLVMIDTLQRLGIDYHFREEIEAFLNTQYMNFSSPNHLPLDVCGVALRFRL LRQEGYNVSQEVFNNFKNEEGNFHLIQENDVKGLMALYEASQLSMESEDILDEAGEFSAKLLNHHESEIVANTLKHPYHKSLARFMVKNFLNNIDIRNEN IKVFSELAKIDCEIVRSIHQKEILQISNWWKDLGLAKELKFARDQPLKWHMWSMSVLIDPNLSEQRVELTKPISLVYIIDDIFDLYGTLNDLSIFTEAVN EWDLTPANQLPESMKISLMALFDITESISTKILEKHGWNPIESLQKSWKKLCNAFLEEAKWFASGKLPKPEEYLRNGIVSSGVHVVLVHMFFLLGQGINK ETVDFVDGFPPIISFTATILRLWDDLGTAKDENQNGHDGSYLECYIREHPNVTVERAREHVSQLICDAWKKLNQECLSRSPFSQSFTNACLNVARMIPLM YSYDDNPGLASLKEHMRSLAAHLESKPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030400 [exp]	0	1
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030200 [exp]	5.65	0.9883
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	7.14	0.9990
					Potri.007G014501 [exp]	10.09	0.9990
					Potri.017G120650 [exp]	10.90	0.9990
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150400 [exp]	12.36	0.9772
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	13.03	0.9990
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	13.96	0.9988
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	14.69	0.9988
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150200 [exp]	15.23	0.9733	CYP76T2,Pt-CYP76.4
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	15.42	0.9987

Compare expression of checked genes

Potri.004G030400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.