Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61690 634 / 0 phosphoinositide binding (.1) AT1G20110 61 / 6e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G43230 57 / 1e-07 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G14270 52 / 5e-06 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G65920 50 / 2e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G33240 49 / 2e-05 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT5G12350 47 / 8e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 47 / 0.0002 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 45 / 0.0003 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 45 / 0.0003 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032200 [exp] 1758 / 0 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.018G064200 [exp] 57 / 9e-08 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G242700 [exp] 57 / 9e-08 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G018900 [exp] 57 / 1e-07 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G135800 [exp] 56 / 2e-07 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.001G163200 [exp] 54 / 1e-06 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G071900 [exp] 52 / 2e-06 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.004G080900 [exp] 52 / 5e-06 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.003G072300 [exp] 52 / 5e-06 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018391 [exp] 617 / 0 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10007623 [exp] 301 / 6e-92 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10017277 [exp] 59 / 2e-08 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 59 / 4e-08 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10038127 [exp] 58 / 6e-08 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10027659 [exp] 54 / 6e-07 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029271 [exp] 53 / 1e-06 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 53 / 1e-06 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10005173 [exp] 54 / 2e-06 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 53 / 2e-06 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G030500.4 pacid=42795586 polypeptide=Potri.004G030500.4.p locus=Potri.004G030500 ID=Potri.004G030500.4.v4.1 annot-version=v4.1 ATGTTGGAGAAGATTAGATTACCAGCAAGGCCATCATTGAGAGGGAATGATTGGGTAGCTGATGCTTCACATTGTCAGGGATGCTCTTCTCAGTTCACTT TCATCAATCGCAAGCATTATTGCCGAAGATGTGGAGGTTTGTTTTGTGGCAATTGCACTCAGCAAAGAATGGTTTTGCGAGGTCAAGGTGATTCTTCTGT GCGTATTTGTGATCCTTGTAAAAAGTTAGAAGAGGCTGCATGTTTTGAGACGCGGTACGGACACAAGAATAGAGCTGGGAAAGGAAGTTCAAGAATGATG CCAAAGAACGAGGATGAAATTTTGAATGAGATTCTAGGCACTGATAGAAAGGAATCTTCTTCATCAGGACGACAGTCGAACACTGACATGTTTTCTAGCA TTCAAAGGGCAAGTAGCTGTGCTTCCTACTCAAATACTCAACAAGTTGATGCTCTGGATGGAGGAGAAATACATAGAAGTCATTCTGTGGATGATCGCAA TCATGTATATAGTGAGGTGGGATCAACCACTCCTGAGGAATTACATCAACAAGCTTTGGATGAAAAGAAGAGGTATAAAATTTTGAAAGCTGAGGGGAGG TCTGAGGAGGCCTTGAAAGCCTTTAAGAGAGGAAAGGAGCTTGAGAGGCAGGCTGATGCTTTGGAATTGTCTACTAGAAAAAATCGTCGGAAGGTTTTGT CTTCTAGCAACACAGTTGAGATTCAGAATGAAGATGGCCCCAAAGAATCTGTCAGAAAAAGTAAACGCCTTGCTCAAGTCAATGAAAAGGACAGCTTTAC TGCTGAACTCAGAGAACTAGGGTGGTCTGATATGGATCTCCATGACAAAGACAAAAAACTGGTGAAAATGAGTTTGGAGGGTGAACTGTCTTCTCTTCTT GGAGAAATCTCTGGTAGAACTAATAAGAACACGGGAAGCAGTGGCATTGACAAAACCCAGGTTTTTGAACTTAAAAGAAAGGCGCTAGCTTTGAAACGTG AAGGAAAGCTTGCCGAAGCCAAGGAAGAATTGAAGAAAGCAAAAGTTTTAGAACAGCAGCTTGAAGAACAGGAGTTGTTGGGTGTGAATGAAGATTCTGA TGATGAGATATCTGCTTTAATCTCTAGCATGGACAGTGATCAAGAAGACAAGCTATTTGCTGAGGATGAGCAGGGTCATGGTTTTGATTTTGATCACCTT GTGGGCACAGCTGATGATCTCCATGTTGATGGTAACTTTGAAGTGACAGATGAGGATCTGGTGGATCCAGAATTAGCTGCTACACTTAAATCATTAGGCT GGACTGATGATTCTGATACTTTGGAAACCACTGCTACACAGTCTGTCCCAATTGATAGGGAAACTCTACGAAGTGAAATTCTTTCACTGAAAAGAGAAGC ACTTAATCACAAACGAGCTGGCAATGTTGTAGAGGCTATGGCTCATCTAAAGAAGGCAAAGTTGCTTGAGAGGGACCTTGAAAGCTTGGGAGGTGAAGTG GGCAGCTTAATTGCACATGATACCACACGAATGATGAAAAGTTCACCTTCCCAAAACACTAATGCAAAGAGCACTCCGAGTTCTAAACCTGCACCAAAAA GTAGATTGATGATTCAGAAAGAGCTCTTGGCTATAAAAAAGAAGGCTCTTGCTTTGAAAAGGGAAGGTAGATTGGATGTGGCAGAGGAAGAGTTGAAGAA AGGCAAGGTTCTTGAACAGCAGCTTGAAGAGATAGACAATGCTTCAAATGTCAAAGGGAAACAGGTGGCTGTTGGGAGTAAGAACCCAGATTTGGAAAAT GAACATCCTAGTATTTCTGGAAGTCCACCAATTAGAGAAGGGGAGGAGGATGTAACAGATCAAGATATGCATGACCCAGCATACCTTTCACTCTTAAGGA ACTTAGGTTGGAAAGATGATGACAATGAGCATGCAAACTCTCCATTTAACCCTCCTAAGGAAAGTGATAACCTTTCTACTCAAACAATCAATCCTTTAGT CACTCGGTCTACATCCAATATCTCATTGAGGACACCAAGAAGAAGCAAAGGTGAAATACAGAGAGAGCTTTTAGGCCTGAAAAGAAAGGCTCTTACTTTA AGACGTGAAGGTAAGATTGACGAGGCAGAGGAAGTGCTTATAGCAGCAAAAGCATTGGAGACCCAGATTGCAGAGATGGAAACACGGAAGAAAGAAATTC AGATTGAGTCTAACAAGCCCAAGGATGAAATTGTCAGACCTGTTAGCAGTGCAGCAGAGGAAGGAGATGTAGATGATATTGCAGAGAAAGATATGCATGA CCCATCCCTGCTCTCATTGCTAATGAATTTAGGGTGGAAGGATGATGAAGTTGAAGTTGTAACCGTGCAAGCAAAGCCATCTAAACAAGTTTTGGATCAT TTGATGCATTCAACTGATCCATCCACAATTCTGCTCTCTTCCAGCATTTCAGCTGCCAGACCAAGAAGCAAAGGTGAAATCCAGAGAGAGCTCTTGGGTT TGAAAAGAAAGGCCCTTTCCCTTAGGCATAATGGAGAAAATCAGGAAGCTGAGGAATTGTTGAAAATGGCCAAGGTACTAGAGTCCCAAATAGATGATCT GGAAGCTCCAAAGAAGGAGCTTTTCCCTGATGCTTCTGAAGACAAAAAATATCAGAGTACTGGATCATTGAATAATCATGTAAAGCAGAATAATGTGAAC AACTCAGTGGAAATGATTGAAAAATTGGCGGCGGCGGCAGCAGCAGTGGATCCTAATGAAAAAGTTATCGAGTCATTCACTGGTTTAGGAAGAAAGGGAA GTGACAAAACTGCTCCTCCCTCATGGAGTCCTGATATTGTCAATCCAGTGCCTTTTGAGATCAATGAAGACAACCGTCCATCTGTAGGAGAGCTTGATCT ATTGGATGAAATGGGATCCTTAAGTAACTCGAGAATAAATCAAGGCACCGAGTTCTTTCCTCCACCTCATCAGTCTATGAATCCGATGGATTTGCTGACT GGTGATGATTGGAGTAGTCCTCAAATACCAGCCAGAAAATTTGAAGATAAAGTCGATTTTGGTTCTGATATATCCTGCCTGCCTGAGCCTCATGTTCATG TTGGCTCCTTGAGAAGTGGGCTTGAAAATCTCAGAAGCAAGGACAGAGAAGCCAATTCTATTTCTGATGTTTTCCATTTTCCTGATCCCCATGTTCATAT GGGTTCCATGATACATGCACCTATGGATCTTGGAAGCACAGAAAATGTTAGAACTGGAAAGAGAGAAGAAACATTTAATTCAGGCAAGAAGCCCCATGTT GATAGAACAGATTCTGCTCAGGGATTGGCTTCTCAGAACAACAAAAATGCCCTTCAACAAGAAGTTTTGGCTCGTAAGAGGAAGGCAGTTGCGTTAAAGA GAGAAGGGAAATTGGCGGAGGCTCGAGAGGAACTTCGGCAGGCAAAGCTGTTGGAGAAGAGTCTTGAGGTCGAGACCCTTGAGCCTGTAAGTGGTACCCA TGATGGGTCAACATCTGTGTCAAATGCTCCCCCTTTTCAACAAAAGGATCCCAGTGCCCCAAAATTTTCTCCAAAACCACTGTCTGGGCGTGATCGATTT AAGTTGCAACAGGAGTCACTGAGCCACAAACGTCAGGCCCTAAAGCTGCGAAGAGAAGGCCAGGTGGAAGAAGCAGAAGCTGAGTTTGAATTGGCCAAGG CTCTGGAAGCCCAGTTGGATGAAATGTCTTCTAATGATTCTGGAAAGTCTTCTGTCAACATAGCAGAACCAGTAGATGATGTAGTTGTTGAAGATTTTCT CGATCCTCAACTTCTATCTGCCTTGAAAGCAATTGGAATTGAAGATAGCAGTATTATATCACAAAGTTCAGAGAGACCAGGACCTGCAAAAGTTAGTCCT ACCAAGAGTGAAAAAAATAGCCAGGAAAGAAATCAGATGGAAGAACGGATCAAGACAGAGAAGGTAAAGGCAGTAAATCTGAAACGTGCAGGGAAGCAAG CTGAAGCTTTGGATGCTTTCCGACGGGCCAAATTATATGAAAAGAAACTAAATTCCTTGGAATGA
AA sequence Show only first row Show all	>Potri.004G030500.4 pacid=42795586 polypeptide=Potri.004G030500.4.p locus=Potri.004G030500 ID=Potri.004G030500.4.v4.1 annot-version=v4.1 MLEKIRLPARPSLRGNDWVADASHCQGCSSQFTFINRKHYCRRCGGLFCGNCTQQRMVLRGQGDSSVRICDPCKKLEEAACFETRYGHKNRAGKGSSRMM PKNEDEILNEILGTDRKESSSSGRQSNTDMFSSIQRASSCASYSNTQQVDALDGGEIHRSHSVDDRNHVYSEVGSTTPEELHQQALDEKKRYKILKAEGR SEEALKAFKRGKELERQADALELSTRKNRRKVLSSSNTVEIQNEDGPKESVRKSKRLAQVNEKDSFTAELRELGWSDMDLHDKDKKLVKMSLEGELSSLL GEISGRTNKNTGSSGIDKTQVFELKRKALALKREGKLAEAKEELKKAKVLEQQLEEQELLGVNEDSDDEISALISSMDSDQEDKLFAEDEQGHGFDFDHL VGTADDLHVDGNFEVTDEDLVDPELAATLKSLGWTDDSDTLETTATQSVPIDRETLRSEILSLKREALNHKRAGNVVEAMAHLKKAKLLERDLESLGGEV GSLIAHDTTRMMKSSPSQNTNAKSTPSSKPAPKSRLMIQKELLAIKKKALALKREGRLDVAEEELKKGKVLEQQLEEIDNASNVKGKQVAVGSKNPDLEN EHPSISGSPPIREGEEDVTDQDMHDPAYLSLLRNLGWKDDDNEHANSPFNPPKESDNLSTQTINPLVTRSTSNISLRTPRRSKGEIQRELLGLKRKALTL RREGKIDEAEEVLIAAKALETQIAEMETRKKEIQIESNKPKDEIVRPVSSAAEEGDVDDIAEKDMHDPSLLSLLMNLGWKDDEVEVVTVQAKPSKQVLDH LMHSTDPSTILLSSSISAARPRSKGEIQRELLGLKRKALSLRHNGENQEAEELLKMAKVLESQIDDLEAPKKELFPDASEDKKYQSTGSLNNHVKQNNVN NSVEMIEKLAAAAAAVDPNEKVIESFTGLGRKGSDKTAPPSWSPDIVNPVPFEINEDNRPSVGELDLLDEMGSLSNSRINQGTEFFPPPHQSMNPMDLLT GDDWSSPQIPARKFEDKVDFGSDISCLPEPHVHVGSLRSGLENLRSKDREANSISDVFHFPDPHVHMGSMIHAPMDLGSTENVRTGKREETFNSGKKPHV DRTDSAQGLASQNNKNALQQEVLARKRKAVALKREGKLAEAREELRQAKLLEKSLEVETLEPVSGTHDGSTSVSNAPPFQQKDPSAPKFSPKPLSGRDRF KLQQESLSHKRQALKLRREGQVEEAEAEFELAKALEAQLDEMSSNDSGKSSVNIAEPVDDVVVEDFLDPQLLSALKAIGIEDSSIISQSSERPGPAKVSP TKSEKNSQERNQMEERIKTEKVKAVNLKRAGKQAEALDAFRRAKLYEKKLNSLE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	2.00	0.7753
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005300 [exp]	4.47	0.7658
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	6.32	0.7858
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	7.14	0.7245
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	9.48	0.7067
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	10.81	0.7402
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	10.95	0.7402	RGA.63
AT3G50430			unknown protein		Potri.005G133500 [exp]	14.59	0.7690
AT3G61690			nucleotidyltransferases (.1)		Potri.002G169732 [exp]	14.66	0.7558
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	18.89	0.7180

Compare expression of checked genes

Potri.004G030500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.