Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 313 / 9e-101 Phototropic-responsive NPH3 family protein (.1) AT3G19850 211 / 2e-61 Phototropic-responsive NPH3 family protein (.1) AT1G50280 183 / 4e-51 Phototropic-responsive NPH3 family protein (.1) AT3G08660 164 / 5e-44 Phototropic-responsive NPH3 family protein (.1) AT5G48800 160 / 2e-42 Phototropic-responsive NPH3 family protein (.1) AT3G50840 159 / 4e-42 Phototropic-responsive NPH3 family protein (.1) AT5G03250 154 / 2e-40 Phototropic-responsive NPH3 family protein (.1) AT1G30440 152 / 3e-39 Phototropic-responsive NPH3 family protein (.1) AT3G08570 150 / 9e-39 Phototropic-responsive NPH3 family protein (.1) AT2G47860 148 / 4e-38 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032100 [exp] 776 / 0 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 466 / 5e-160 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 451 / 5e-154 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 265 / 3e-81 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 261 / 6e-80 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 167 / 5e-45 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 155 / 9e-41 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 155 / 2e-40 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.001G357100 [exp] 154 / 3e-40 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039710 [exp] 372 / 2e-123 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 359 / 2e-118 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 177 / 1e-48 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 168 / 5e-45 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 167 / 7e-45 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 160 / 2e-42 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 158 / 1e-41 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 156 / 7e-41 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 153 / 8e-40 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 152 / 2e-39 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.004G030600.1 pacid=42796309 polypeptide=Potri.004G030600.1.p locus=Potri.004G030600 ID=Potri.004G030600.1.v4.1 annot-version=v4.1 ATGGAAGTTTGCTACATTCTTGAAGTTGATGTCAATGGAGAAGAAATTTTCATAGTGGACAAGAAAACTCTTTCATCCTTCTCAGATAGGCTCAGCAAAT TATTTGGTGATTTGACTGATGGTTCAAGAAAATTGAAAGTAATATTTGACAACTTTCCAGGAGGTGCATATGGTTTCGAGCTCATGGCAAGGTTTTGCTA CAACAATGGCACCATTGAGATAACTCCTTCTAACATTGTGCTGCTAAACCATGCTGCTCATTACATGGAGATGGGCAGTAATAGCTCAGCAAAGCTTAAT CTAGTAGATCAGACTGAGAAATTTCTTGAAGGGATCAACTACTGGACTTGGTCTGACCTCCTGCAAGCCCTTAAACTGTGCCAAGATTTACTTCCTACTA TAAATTCTTCATTTTTGCTTGATAAAGTCTTGGATTGCCTTGTAGGGAGGCTTACTTTGCCAACTATGGCAAGCCCATTTACATGTTCTTCAAACAATTC CAGTTTTCAGTTCTCATGTGATACAAGCAGCACCTGTAGTATGAGAAACAACTGGTCTCAAACAACTTGGTGGTTTGAAGATCTTTTGGTTTTGAATGTT AATTCATTTGACAAAGTAATCAGGATGATGATGTCCCAGAAACTAGATCATGCTGCCATTTTTAAGTTCATCGTTTTTCGCCTAAAATCGAGATATTTCA GTGTCACGGCATCTGAGAAGTGCAAAATCACAGAGGTTGCAATCAATCTGCTTTCACTGCTTGATAGGAGCTCTCTTTCTTGCAGAGGCTTATTTGATAT TCTACTAGCAGTCTCAAGGTTGAAAAATATAAGCAAGTTTTACGCACTCAAGCTAGAGCATCTGGTTGGTTCAATGCTAGATCAAGCAACTTTGGATCAT CTACTTGTTCCATCTCCACACAGGAACCATCATGTGTATGATGTGAATTTAGTTTTGAGGCTTTTAAAAGCATTTTTCCTTGAAGGTTCAACGATGTCTC GAAATCAATTGAAGAAGGTTGCTAGCTTGATGGATTCGTACCTTATAGAAGTAGCCCCAGATATCCTTCTGAAACCTTCCAAGTTTGCAGCATTGATAAT GGTTTTGCCAGATTCTGCTAGAGAATTCAGTGACAGACTCTATCACGCTATTGACATGTATCTCCAGGTCCATGTTCAATTATGTGAAGAGGTAAAGATG AGACTATGTTCTTTTGTCAACCATGATAAGCTCTCGGCAGAAGCTTCCAAACACCTTGCTCGAAACTCAAACTTTCCAACAAGATCAACACTCAAAAGTT TCATTACTCAGAAATCCAAGCTCAATTGCTTAATCCATAATCGCTTATCTCATTTCGAAGTCTCAAGCCAATTGAAGTTTCATAGCAATGCCATGGAAGA ACAAGAGGGCTTTGATCAAATCCTTATTTATGCTAGAAAGCATGGACATTCAAAGGAGATTGACAATCTTGAAACCAGATTGCAAGGAATGCAGAAAAAG GTGACAGAATTGGAGAAAGTTTGTACAATGATGCATTCGGAGATGTCAAGTGTGACAAAATCAAGATTGCATGGCCCTGGAAAGGCTAGATCATTGCCGA AACTTTGTTCATGA
AA sequence Show only first row Show all	>Potri.004G030600.1 pacid=42796309 polypeptide=Potri.004G030600.1.p locus=Potri.004G030600 ID=Potri.004G030600.1.v4.1 annot-version=v4.1 MEVCYILEVDVNGEEIFIVDKKTLSSFSDRLSKLFGDLTDGSRKLKVIFDNFPGGAYGFELMARFCYNNGTIEITPSNIVLLNHAAHYMEMGSNSSAKLN LVDQTEKFLEGINYWTWSDLLQALKLCQDLLPTINSSFLLDKVLDCLVGRLTLPTMASPFTCSSNNSSFQFSCDTSSTCSMRNNWSQTTWWFEDLLVLNV NSFDKVIRMMMSQKLDHAAIFKFIVFRLKSRYFSVTASEKCKITEVAINLLSLLDRSSLSCRGLFDILLAVSRLKNISKFYALKLEHLVGSMLDQATLDH LLVPSPHRNHHVYDVNLVLRLLKAFFLEGSTMSRNQLKKVASLMDSYLIEVAPDILLKPSKFAALIMVLPDSAREFSDRLYHAIDMYLQVHVQLCEEVKM RLCSFVNHDKLSAEASKHLARNSNFPTRSTLKSFITQKSKLNCLIHNRLSHFEVSSQLKFHSNAMEEQEGFDQILIYARKHGHSKEIDNLETRLQGMQKK VTELEKVCTMMHSEMSSVTKSRLHGPGKARSLPKLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	0	1
AT1G76770			HSP20-like chaperones superfam...		Potri.005G192700 [exp]	5.19	0.8845
AT1G78940			Protein kinase protein with ad...		Potri.007G001900 [exp]	9.27	0.8073
AT2G23360			Plant protein of unknown funct...		Potri.009G099500 [exp]	9.79	0.8146
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	10.67	0.8527
AT3G60320			Protein of unknown function (D...		Potri.014G047400 [exp]	10.90	0.8334
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	15.23	0.8739
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	16.15	0.8640
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	16.24	0.8302
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.015G066000 [exp]	20.39	0.8278	HA2.2
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.001G325300 [exp]	20.97	0.8325

Compare expression of checked genes

Potri.004G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.