Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21310 224 / 6e-76 Protein of unknown function (DUF1218) (.1) AT2G32280 192 / 3e-63 Protein of unknown function (DUF1218) (.1) AT1G11500 118 / 5e-34 Protein of unknown function (DUF1218) (.1) AT1G05291 91 / 7e-23 Protein of unknown function (DUF1218) (.1) AT5G17210 41 / 0.0001 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031500 [exp] 260 / 5e-90 AT4G21310 258 / 3e-89 Protein of unknown function (DUF1218) (.1) Potri.017G040900 [exp] 214 / 5e-72 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 199 / 5e-66 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 40 / 0.0004 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018386 [exp] 226 / 1e-76 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10007626 [exp] 225 / 3e-76 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1) Lus10038567 [exp] 188 / 1e-61 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10039706 [exp] 168 / 1e-53 AT2G32280 222 / 4e-75 Protein of unknown function (DUF1218) (.1) Lus10018495 [exp] 167 / 2e-53 AT2G32280 221 / 6e-75 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [poplar] [flax] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Potri.004G031200.1 pacid=42795051 polypeptide=Potri.004G031200.1.p locus=Potri.004G031200 ID=Potri.004G031200.1.v4.1 annot-version=v4.1 ATGGCTAAAAATCATGGTATTTTGGTTTGTCTCCTAATCATAGCACTGGATGTTGTTGCTGGCATACTTGGGATTGAAGCTGATATGGCTCAAAACAAGG TGAAGCATTTAAAGATGTGGGTTTTTGAGTGTAGAGACCCGAGCTATCAAGCTTTCAAGCTAGGTTTGGCTGCAATATTATTTCTTCCCCTTGCTCATAT CATTGCTAACTTGCTTGGTGGATGCACTTGCATGTGGTCCAAGGAAGATTTCGGAAAGGCATCCGCTACTAGGAAGCTAGCTGTAGCTTCTCTTTTCTTC TCATGGATCATACTGGCCATTGGGTTCACAATGCTGGTCATAGGGACAATGGCAAACTCAAAATCAAGAAAATCATGTGGATTATCGTATCATCACATTC TCTCCATCGGAGGCATCCTGTGTTTCATTCATGGAATCTTCGCAGTAGCCTATTATGTATCTGCCACTGCTTCAGCCAGAGACCATTCTCGGCATCGAAC CCCTGCTACTTCTCAAGCGTAG
AA sequence Show only first row Show all	>Potri.004G031200.1 pacid=42795051 polypeptide=Potri.004G031200.1.p locus=Potri.004G031200 ID=Potri.004G031200.1.v4.1 annot-version=v4.1 MAKNHGILVCLLIIALDVVAGILGIEADMAQNKVKHLKMWVFECRDPSYQAFKLGLAAILFLPLAHIIANLLGGCTCMWSKEDFGKASATRKLAVASLFF SWIILAIGFTMLVIGTMANSKSRKSCGLSYHHILSIGGILCFIHGIFAVAYYVSATASARDHSRHRTPATSQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	0	1
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G151000 [exp]	1.41	0.9543
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	1.41	0.9568
					Potri.010G132101 [exp]	4.47	0.9409
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.012G090400 [exp]	6.92	0.9450
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	9.16	0.9442
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.011G121600 [exp]	9.89	0.8958
AT3G50120			Plant protein of unknown funct...		Potri.006G042500 [exp]	10.09	0.9347
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	12.00	0.9198
					Potri.005G047000 [exp]	13.67	0.9278
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	14.24	0.9084

Compare expression of checked genes

Potri.004G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.