Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13420 248 / 2e-80 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03770 244 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 240 / 9e-77 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT3G45070 238 / 1e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03760 234 / 7e-75 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT3G45080 234 / 8e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 232 / 4e-74 SOT7 sulphotransferase 7 (.1) AT2G03750 227 / 7e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 225 / 3e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 225 / 4e-71 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032700 [exp] 264 / 2e-86 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048400 [exp] 261 / 3e-85 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.010G138501 [exp] 254 / 7e-83 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138450 [exp] 253 / 3e-82 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G049100 [exp] 251 / 2e-81 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 251 / 2e-81 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.010G138400 [exp] 251 / 3e-81 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193400 [exp] 249 / 1e-80 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 249 / 2e-80 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 248 / 7e-80 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 246 / 4e-79 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10026147 [exp] 233 / 3e-74 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10003070 [exp] 214 / 5e-67 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041611 [exp] 213 / 2e-66 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 209 / 6e-65 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 211 / 1e-62 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033718 [exp] 200 / 2e-61 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 199 / 6e-61 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 198 / 9e-61 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.004G031400.1 pacid=42795847 polypeptide=Potri.004G031400.1.p locus=Potri.004G031400 ID=Potri.004G031400.1.v4.1 annot-version=v4.1 ATGATGTCTTACTCTCCTAATCTTCAAAAACCTTCAAACAGTACTAACCACTACGAAGAAGATCAACAACAACAACAACAACAGATCAAAAGCCAGTCCC AGAAATATGAAGAGATTATTTCAACCCTTCCTAAGGATCAATATGGATGGTTGGATGAGCATTACAAGATTGAAGGATTTTGGTATGATCCTGTTTGGGC TGTTGGAGTTCTTTGGGCACAGGAAAACTTCCAGGCACGCTCTAGTGATATTATTTTGGCTTCATTTCCCAAGTGTGGCACCACATGGCTGAAGGCTCTC ATGTTTGCCATCCAGAAGAGAAATGATCGTTGCCTCAATGATTCAACTCACCCTTTACTCACTACAAACCCTCATAAGTGTGTTCCCTATTTTGAGCTGC AAGCTCATGAAGATGACCCAATTACATACCTAGATTCTCTTCCCTCACCTAGGCTACTTGGCACACATATCTCTTACACTTCACTGCCGAAATCCATCAT AAATTCAGGTTCTAAGATTGTGTGTATCTGTCGGGACTCGAAAGATGTTTTGGCCTCCTTGTGGAAGTTTGTCAATAAAATAAGATCTGGAAGGAACATG CTACCCCTGCCTCTGGAAGAAGGGTTTGAGCTTTTCTGTAAAGGAGTTTGTCTTTCAGGACCCTTTTGGGAGTACAATTCGGAGTACTGGAACGCAAGTT TAGAACGTCCGAATAATGTATTTTTTCTCAAGTATGAGGATCTGAAGAAGGATACTGCTTTTTACGTGCAGAAGCTGGCACAATTCATGGAACGTCCCTT CTCGGTGGATGAAAAAAGTAAAGGTGTCGTGAAAGACATAATAAAGCTATGTAGTCTTGAGAATTTGAGCAATCTGGAGGTGAACAAAACTGGAACATTT CATCTGGGCTCCAAAGCAAAGGTGGACAACAATGCATTCTTCCGGCGAGGTAACGTTGGAGATTCGAAGACTTGTCTGACGCCTACGATGATTAAGCGAC TTGATGAGATTACAAAGGCAAAGTTCAGAGGGTCTGGACTGGCAATTTAG
AA sequence Show only first row Show all	>Potri.004G031400.1 pacid=42795847 polypeptide=Potri.004G031400.1.p locus=Potri.004G031400 ID=Potri.004G031400.1.v4.1 annot-version=v4.1 MMSYSPNLQKPSNSTNHYEEDQQQQQQQIKSQSQKYEEIISTLPKDQYGWLDEHYKIEGFWYDPVWAVGVLWAQENFQARSSDIILASFPKCGTTWLKAL MFAIQKRNDRCLNDSTHPLLTTNPHKCVPYFELQAHEDDPITYLDSLPSPRLLGTHISYTSLPKSIINSGSKIVCICRDSKDVLASLWKFVNKIRSGRNM LPLPLEEGFELFCKGVCLSGPFWEYNSEYWNASLERPNNVFFLKYEDLKKDTAFYVQKLAQFMERPFSVDEKSKGVVKDIIKLCSLENLSNLEVNKTGTF HLGSKAKVDNNAFFRRGNVGDSKTCLTPTMIKRLDEITKAKFRGSGLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.004G031400 [exp]	0	1
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Potri.001G325600 [exp]	13.26	0.7030
					Potri.001G372750 [exp]	26.83	0.5567
AT1G34390	ARF	ARF22	auxin response factor 22 (.1)		Potri.015G016700 [exp]	30.65	0.5144
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.007G102700 [exp]	33.67	0.5730
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Potri.002G224500 [exp]	40.19	0.6382
AT3G30383			Protein of unknown function (D...		Potri.017G039150 [exp]	44.27	0.6002
AT5G06990			Protein of unknown function, D...		Potri.001G031900 [exp]	58.65	0.6218
					Potri.006G126750 [exp]	72.24	0.5584
AT3G19940			Major facilitator superfamily ...		Potri.007G073900 [exp]	73.48	0.6155
AT2G21110			Disease resistance-responsive ...		Potri.008G061400 [exp]	88.37	0.5442

Compare expression of checked genes

Potri.004G031400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.