Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21270 1077 / 0 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 1055 / 0 ATK5 kinesin 5 (.1) AT5G54670 876 / 0 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G27180 854 / 0 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G27550 320 / 2e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 322 / 4e-95 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 305 / 1e-89 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 303 / 2e-89 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G63640 303 / 4e-89 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 300 / 6e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031200 [exp] 1532 / 0 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.011G131900 [exp] 934 / 0 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.001G416300 [exp] 934 / 0 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.013G020700 [exp] 311 / 3e-94 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 318 / 1e-93 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 314 / 4e-92 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 305 / 6e-92 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G125700 [exp] 297 / 3e-87 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 296 / 1e-86 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018384 [exp] 1144 / 0 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10007629 [exp] 1130 / 0 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10035838 [exp] 895 / 0 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 893 / 0 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10029865 [exp] 305 / 9e-90 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10035954 [exp] 305 / 2e-89 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 300 / 8e-88 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 300 / 2e-87 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10032264 [exp] 299 / 7e-87 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10004487 [exp] 290 / 8e-86 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.004G031600.7 pacid=42795515 polypeptide=Potri.004G031600.7.p locus=Potri.004G031600 ID=Potri.004G031600.7.v4.1 annot-version=v4.1 ATGACTTCTAGGAACCAGAATCGGCCTCCTCGAAGTCCTTCTTCTAAGAAGGAAGGGGTGGAAAGTATCCCATTAGATAAGCGGAGGAGGATTGGGATGG GAAGAACAGGAGGAGCCACGAACGCGGAACGCAAGCCATTTGGTTCTGTTAACAAAAAGCTGGATGTTGCTGCCACCAGTGATGTGGGAAGCTGTGTTGA GGGTTCGGATTGTGGCAATGTTGAGTTTACTAAAGAAGAAATTGATGCGCTGGTGAATGAGAGATTGAAGATGAAGAAGTTTGATCACAAGGGTAATATG GAACTAGTGAGTGAACTTAATGCCAGGCTCAAGGTTTGTATCAAATGGTTCCAGAAGAGGGATGAAGCCCATGTTGAAGGGGAAGGAAAGCTTCAAAAAG CTTTAGATGCTTTGGAGAAGAAGTGTGCTGAAACTGAGGCAGAGATGAAAAACAAGGAGGAGAGATTTAGTGCAACTATTAGTGAGCTGAGGCAAGATAA TACTTGTGTACAAGAGAGACTTGTAAAAGAAGAATCAGAAAAGCTGGATGCAATTGCTTGTCATAGAAAGGAAAATGAAGCAAGAATTGCATTAGAAGCT TTGCAGGCTTCTCTATCGAAAGATCTTGAGAAAGCCCAACAAGATATTTTAGTTGCCAATCAAAGGGCTGCCTCGGTTGATGATATGTACAAGCGATTAC AAGAGTACAACTTGAGTTTACAACAGTACAATAGCAAGCTGCATTCTGAACTTGAAGTTGCTCGTGAGTCTCTAAAACGTGTAGAAAAAGAGAAGTCTAC TATAATGGAGAACCACAGTACATTAAGGGGTCACTATAGTTCATTGCAGGATCAGTTAAATTTAGCCAGGACTGCTCAAGATGAAGCTTTGAATCAGAAA GACACATTAGCAAATGAAGTGAAATGTCTCCGAGGAGAGTTGCAGCAGGTTAGAGAGGATCGTGATCGCCAAGTAGCTCAAGTGCAGGTTTTAACTTCTG ATGTGGTGAAGTATAAAGAAAGTACCAGTGAATCCTGTGCAAAACTAGAATATCTGATGGAAAAAACAAAATCCTTGGAGGAGACATGCTCTTCTCAGAG GGAGCAGATACGCCTGTTGGAGCATCAGCTCACTGCTACAAATGAAAAGTTAAAGATGTCTGATTTATCTTCTATACAAACAAGGGCAGAATTTGAAGAG CAAAGGAGAAATGTACATGATTTACAGGAGCGCCTAGCAGAGACAGAATATCAACTAGTTGAAGGAGAGAAATTGAGGAAAAAATTGCATAACACTATCT TGGAGCTAAAGGGGAATATTCGAGTATTTTGCAGAGTGCGTCCTGTGTTGCCAGATGATGTTGCTGGGTCTGAGCAGCCTGTCATTTCATATCCTACCTC AACAGAAGCTCTTGGCAGAGGCATCGATGTAATACAAAGTGCAGGACAGAAATATCCTTTTAACTTTGACAAGGTGTTCAATCATGATGCCTCTCAGCAA GAAGTTTTTGTGGAAATATCACAGCTTGTGCAGAGTGCCCTTGATGGCTATAAGGTATGCATCTTTGCTTATGGTCAAACAGGTTCAGGAAAAACTTATA CTATGATGGGCAAGCCAGAAGCTTCAGAGCAGAAGGGGCTGATACCACGCTCTTTAGAACAAATATTTCAAACAAGTCAATCCCTTATAGCACAGGGTTG GAAGTACAAAATGCAGGCTTCAATGCTGGAAATATACAATGAAACCATTCGTGATTTGTTGTCAACAAATAAATCGAGTGGTGCAGAAAATGGAGCTCCT GGAAAGCAGTATACCATCAAACACGATGCAAATGGAAACACCAATGTCACTGATCTTACAATTGTGGATGTTTGTAGAATAGAAGAGATTTCTTCTCTTC TTCGGCAAGCTGCACAAAGCAGGTCCGTTGGTAAGACCCAAATGAATGAACAGTCTTCAAGAAGCCATTTTGTGTTCACATTGCGTATATCAGGAGTAAA TGAGGGTACTGAACAACAAGTGCAAGGAGTTCTAAACCTCATAGATCTTGCTGGAAGTGAGCGACTCTCAAGGAGTGGGGCTACTGGAGACAGGTTAAAG GAAACTCAGGCCATTAATAGAAGCTTGTCAAGTTTGAGTGACGTGATATTTGCTTTGGCAAAGAAAGAGGACCATGTTCCTTTTAGGAACTCAAAATTGA CTTATCTTCTGCAGCCTTGTCTAGGAGGGGATTCCAAAACCCTGATGTTTGTCAATATTTCCCCGGATCCTGCTTCAGTTGGCGAGTCCCTTTGTTCCCT TCGGTTTGCTGCCAGAGTCAATGCTTGCGAAATTGGGATTCCTCGACGCCAAATGACTGCTCAAATGACATCTTGA
AA sequence Show only first row Show all	>Potri.004G031600.7 pacid=42795515 polypeptide=Potri.004G031600.7.p locus=Potri.004G031600 ID=Potri.004G031600.7.v4.1 annot-version=v4.1 MTSRNQNRPPRSPSSKKEGVESIPLDKRRRIGMGRTGGATNAERKPFGSVNKKLDVAATSDVGSCVEGSDCGNVEFTKEEIDALVNERLKMKKFDHKGNM ELVSELNARLKVCIKWFQKRDEAHVEGEGKLQKALDALEKKCAETEAEMKNKEERFSATISELRQDNTCVQERLVKEESEKLDAIACHRKENEARIALEA LQASLSKDLEKAQQDILVANQRAASVDDMYKRLQEYNLSLQQYNSKLHSELEVARESLKRVEKEKSTIMENHSTLRGHYSSLQDQLNLARTAQDEALNQK DTLANEVKCLRGELQQVREDRDRQVAQVQVLTSDVVKYKESTSESCAKLEYLMEKTKSLEETCSSQREQIRLLEHQLTATNEKLKMSDLSSIQTRAEFEE QRRNVHDLQERLAETEYQLVEGEKLRKKLHNTILELKGNIRVFCRVRPVLPDDVAGSEQPVISYPTSTEALGRGIDVIQSAGQKYPFNFDKVFNHDASQQ EVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGKPEASEQKGLIPRSLEQIFQTSQSLIAQGWKYKMQASMLEIYNETIRDLLSTNKSSGAENGAP GKQYTIKHDANGNTNVTDLTIVDVCRIEEISSLLRQAAQSRSVGKTQMNEQSSRSHFVFTLRISGVNEGTEQQVQGVLNLIDLAGSERLSRSGATGDRLK ETQAINRSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPASVGESLCSLRFAARVNACEIGIPRRQMTAQMTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Potri.004G031600 [exp]	0	1	Pt-ATK1.1
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	1.73	0.9749
AT4G17000			unknown protein		Potri.009G081900 [exp]	2.44	0.9749
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	3.46	0.9690
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	4.12	0.9577
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	5.47	0.9670
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	5.91	0.9647
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336832 [exp]	6.92	0.9621
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	8.00	0.9675
					Potri.017G113501 [exp]	8.00	0.9640
AT3G03130			unknown protein		Potri.013G081600 [exp]	9.48	0.9628

Compare expression of checked genes

Potri.004G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.