Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54680 226 / 8e-75 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 211 / 1e-68 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G14410 141 / 8e-41 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 137 / 5e-39 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19860 82 / 3e-18 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 75 / 7e-16 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G49770 40 / 0.0009 bHLH ZOU, RGE1, bHLH095 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031000 [exp] 387 / 6e-138 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 217 / 2e-70 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G132400 [exp] 214 / 7e-70 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G072900 [exp] 153 / 3e-46 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 147 / 9e-44 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 85 / 4e-19 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 82 / 4e-18 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 82 / 5e-18 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G074400 [exp] 50 / 3e-07 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020069 [exp] 266 / 2e-90 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011167 [exp] 238 / 4e-79 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 237 / 1e-78 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021199 [exp] 160 / 4e-49 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 160 / 1e-48 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 156 / 2e-47 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 151 / 9e-46 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041908 [exp] 64 / 8e-12 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 64 / 1e-11 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10024233 [exp] 45 / 1e-05 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G031800.1 pacid=42794624 polypeptide=Potri.004G031800.1.p locus=Potri.004G031800 ID=Potri.004G031800.1.v4.1 annot-version=v4.1 ATGGTGTCACCAAATGATAATGCTAACTGGGTTTTTGATTGTGGGTTGATTGAAGACGTTCCTGTCCCTGTTGGTGAACAACTTTGTCTTGAATCTCTTG ATGAAACCCCAAACGGGTCTCTTTGGTCGTCTCATTCTTTCAATGATACTGCCTTTTTAAGTGCGGAATTCAATAATTCATTTGAGAATTCAGATGGTCT TAAGGAAATTGGGTTTCGAAAACGGGTGAGGCATGGATCAGGTAATGCACCTGGCTCCAAAGCATGCAGAGAGAAAATGCGGCGGGATAGGCTGAATGAC AGATTCATGGAATTGGGTGCTCTTCTAGATCCTGGAAGGCCTCCTAAAGTGGACAAATCTGCTATGCTAGTTGATGCTGCTCGAATGGTGACTCAGTTAC GAGATGAATCTCAGAAGCTGAAAGAGTCTATTGAGAGTCTACAGGAGAAGATCGATGAACTAAAGGCAGAGAAGAACGAGCTTCGTGATGAGAAACAGAA GCTAAAGATGGAAAAGGAGAACCTAGAGTGGCAACAGAAAGCCCTGAGTCCTCCACCAACCTACCTACCTCACCCCCCTGCCATTCCAGCTCCATTTTCT GCCCCAGGCCAAGTTGTTGGCAGCAAGCTGATGCCCTTCGTTGGCTATCCTGGAATATCTATGTGGCAGTTCATGCCCCCCACTGTTGTTGATACTTCTC AGGATCATGTTCTACGCCCTCCAGTCGCTTAA
AA sequence Show only first row Show all	>Potri.004G031800.1 pacid=42794624 polypeptide=Potri.004G031800.1.p locus=Potri.004G031800 ID=Potri.004G031800.1.v4.1 annot-version=v4.1 MVSPNDNANWVFDCGLIEDVPVPVGEQLCLESLDETPNGSLWSSHSFNDTAFLSAEFNNSFENSDGLKEIGFRKRVRHGSGNAPGSKACREKMRRDRLND RFMELGALLDPGRPPKVDKSAMLVDAARMVTQLRDESQKLKESIESLQEKIDELKAEKNELRDEKQKLKMEKENLEWQQKALSPPPTYLPHPPAIPAPFS APGQVVGSKLMPFVGYPGISMWQFMPPTVVDTSQDHVLRPPVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.004G031800 [exp]	0	1
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Potri.007G023600 [exp]	5.65	0.8712
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	7.28	0.8791
AT3G45740			hydrolase family protein / HAD...		Potri.010G216000 [exp]	10.09	0.8291
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	22.64	0.8571
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	25.65	0.8388
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	26.53	0.8375
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	28.77	0.8359
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	29.29	0.8159
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	29.44	0.7936
					Potri.004G050700 [exp]	30.90	0.8551

Compare expression of checked genes

Potri.004G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.